View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21566_low_6 (Length: 376)
Name: NF21566_low_6
Description: NF21566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21566_low_6 |
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Alignment Details
Target: chr3 (Bit Score: 341; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 341; E-Value: 0
Query Start/End: Original strand, 1 - 360
Target Start/End: Original strand, 42943897 - 42944254
Alignment:
| Q |
1 |
ggaatgaattttcccccataatgtgggcctaaggaacccacaaaaggaaattagagtatgtagatgaagagacattaagattccattatgcgaacaaagt |
100 |
Q |
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| T |
42943897 |
ggaatgaattttcccccataatgtgggcctacggaacccacaaaaggaaattagagtatgtagatgaagagacattaagattccattatgcgaacaaagt |
42943996 |
T |
|
| Q |
101 |
aacaatcatgactgcttggtgtatatatgctcttgtactcacaatgcccttcaaataaaaaataaaacagaagggaaaattaaagtataaaccttactct |
200 |
Q |
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| T |
42943997 |
aacaatcatgactgcttggtgtatatatgctcttgtactcacaatgcccttcaaataaaaaataaaacagaagggaaaattaaagtataaaccttactct |
42944096 |
T |
|
| Q |
201 |
actagtctagtgatacttgatagcaatcttttgtaaatactatacaagatttttacatttggaaatttggataaatgctttagtctttgattctgcaatg |
300 |
Q |
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| T |
42944097 |
actagtctagtgatacttgatagcaatcttttgtaaatactatacaaga--tttacatttggaaatttggataaatgctttagtctttgattctgcaatg |
42944194 |
T |
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| Q |
301 |
atgtatgtaaatcagaaagcacctgtagcaagccttgcttgattgacaagagacaatagt |
360 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
42944195 |
atgtatgtaaatcagaaagcacctgtagtaagccttgcttgattgacaagagacaatagt |
42944254 |
T |
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