View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21566_low_7 (Length: 353)
Name: NF21566_low_7
Description: NF21566
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21566_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 1 - 324
Target Start/End: Complemental strand, 24390762 - 24390439
Alignment:
| Q |
1 |
actcgatggaatagtcgcgctctatttgtattatttgtttgtttcgctcagatttcttttgttgaattttgataaaactagggctatcgattagagcatt |
100 |
Q |
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| T |
24390762 |
actcgatggaatagtcgcgctctatttgtattatttgtttgtttcgctcagatttcttttggtgaattttgataaaattagggctatcgattagagcatt |
24390663 |
T |
|
| Q |
101 |
ccatgacttgcaaacgcacctgaatcgcataagaagtttcacggtaaggaatgataacacttcacaaacaagttcatctgggagaattaccggtggagat |
200 |
Q |
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| T |
24390662 |
ccatgacttgcaaacgcacctgaatcgcataagaagtttcacggtaaggaatgataacacttcacagacaagttcatctgggagaattaccggtggagat |
24390563 |
T |
|
| Q |
201 |
gacagttgcgcaagggatcgacgtcgtgacttagcgggagggatattcatcagaactgtacttttttcttctgtgattgaaatttgaaccttaacagatg |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
24390562 |
gacagttgcgcaagggatcgacgtcgtgacttagcgggagggatattcatcagaactgtacttttttcttctgtgattgaaatttgaagcttaacagatg |
24390463 |
T |
|
| Q |
301 |
ccgaaagttgagttatagagcaac |
324 |
Q |
| |
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||||||||||||||||| |||||| |
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| T |
24390462 |
ccgaaagttgagttatatagcaac |
24390439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 20 - 324
Target Start/End: Complemental strand, 24384518 - 24384213
Alignment:
| Q |
20 |
ctctatttgtattatttgtttgtttcgctcagatttcttttgttgaattttgataaaactagggctatcgattagagcattccatgacttgcaaacgcac |
119 |
Q |
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| T |
24384518 |
ctctattcgtattatttgtttgtttcgttcagatttgtttcggtgaatcttgataaaactagggctagagattagagaattccacgacttgcaaacgcac |
24384419 |
T |
|
| Q |
120 |
ctgaatcgcataagaagtttcacggtaaggaatgataacacttcacaaacaagttcatctgggagaattaccggtggagatgacagttgcgcaagggatc |
219 |
Q |
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|| |||||||||||| | ||||||||||||||||||||||||||| | | ||| ||||| |||||||||||| || ||||||| ||||||||||||| |
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| T |
24384418 |
ctaaatcgcataagatgattcacggtaaggaatgataacacttcaaagataagatcatcggggagaattacctgtcgagatgatggttgcgcaagggact |
24384319 |
T |
|
| Q |
220 |
gacgtcgtgacttagcgggagggatattcatcagaactgtact-tttttcttctgtgattgaaatttgaaccttaacagatgccgaaagttgagttatag |
318 |
Q |
| |
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| ||| |||||| ||||||||||||||||||||||| | ||||| |||||||||||||| ||||||| |||||||||| ||||||||||||||| |
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| T |
24384318 |
tgggcagtggcttagctggagggatattcatcagaactgttttgtttttattctgtgattgaaaattgaaccctaacagatgcagaaagttgagttatat |
24384219 |
T |
|
| Q |
319 |
agcaac |
324 |
Q |
| |
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|||||| |
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|
| T |
24384218 |
agcaac |
24384213 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 38 - 164
Target Start/End: Complemental strand, 24383438 - 24383312
Alignment:
| Q |
38 |
tttgtttcgctcagatttcttttgttgaattttgataaaactagggctatcgattagagcattccatgacttgcaaacgcacctgaatcgcataagaagt |
137 |
Q |
| |
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||||||| | |||||||||||||| |||||||| ||||| ||||| || || || ||||||||| ||||||||||||| ||| ||||| |||||| | |
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| T |
24383438 |
tttgttttgttcagatttcttttggtgaatttttataaatttagggttagagactaaagcattccaagacttgcaaacgcgcctaaatcgtgtaagaaat |
24383339 |
T |
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| Q |
138 |
ttcacggtaaggaatgataacacttca |
164 |
Q |
| |
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|||||||||||||| |||| |||||| |
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| T |
24383338 |
ttcacggtaaggaactataagacttca |
24383312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 36 - 156
Target Start/End: Original strand, 24956295 - 24956419
Alignment:
| Q |
36 |
tgtttgtttcgctcagatttcttttgttgaattttgataaaactagggctatcgattagagcattccatgacttgcaaacgcacctgaat----cgcata |
131 |
Q |
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||||||||||| |||| ||||||||| |||||||| ||||| ||||| || ||||||||||||||| |||||||||| ||||||||| |||||| |
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| T |
24956295 |
tgtttgtttcgttcaggtttcttttggtgaattttaataaatttagggttagagattagagcattccaatacttgcaaacacacctgaatcgcacgcata |
24956394 |
T |
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| Q |
132 |
agaagtttcacggtaaggaatgata |
156 |
Q |
| |
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||| |||||||||||||||| |||| |
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|
| T |
24956395 |
agaggtttcacggtaaggaaagata |
24956419 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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