View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21567_low_2 (Length: 527)
Name: NF21567_low_2
Description: NF21567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21567_low_2 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 157; Significance: 3e-83; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 18 - 291
Target Start/End: Complemental strand, 1847942 - 1847665
Alignment:
| Q |
18 |
tattgttagattgaatattttcactcaacaaatttccattgtatgagtttacaatnnnnnnn--taacaataattttataacatcaaaaaataaatattt |
115 |
Q |
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| T |
1847942 |
tattgttagattgaatatttcca----acaaatttccattgtatgagtttacaataaaaaaaaataacaataattttatatcgtcaaaaaataaatattt |
1847847 |
T |
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| Q |
116 |
tcgtgatatcatccttagaatttcttatttaaataattagtataannnnnnnc------atggaggtagaaaatgatatctcaaagtttacattacttgc |
209 |
Q |
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| T |
1847846 |
tcgtgatatcatccttataatttcttatttaaataattagtataatatttttttttttaatggaggtagaaaatgatatctcaaagtttacattacttgc |
1847747 |
T |
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| Q |
210 |
aaattgtgtgtttagatgtatacaataatttgataataatttttggacaatttcatcttttatacttacattatgtttatat |
291 |
Q |
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| T |
1847746 |
aaattgtgtgtttagatgtatacaataattttatgataatttttggacaatttcatcttttatacttacattatgttcatat |
1847665 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 157; E-Value: 3e-83
Query Start/End: Original strand, 309 - 511
Target Start/End: Original strand, 1848313 - 1848522
Alignment:
| Q |
309 |
atcattcataccatccttccatgatccactat---------caaaccattttccgcatatatttttcatgacttttaatgtataccttctcactttacga |
399 |
Q |
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| T |
1848313 |
atcattcataccatccttccatgatccactattaatctcatcaaaccattttcctcatatatttttcatgacttttaatgtataccttctcactttacga |
1848412 |
T |
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| Q |
400 |
atctattaacctatgtgatctgacacttctgatccaagaagtttgtttgtttggtgtctctgacacgacacctacatatgattacttcaatcaattaaat |
499 |
Q |
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| T |
1848413 |
atctatt--cctatgtgatctgacacttctgatccaagaagtgtgtttgtttggtgtgtctgacacgacacctacatatgattacttcaatcaattaaat |
1848510 |
T |
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| Q |
500 |
actagtgtcaac |
511 |
Q |
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| T |
1848511 |
actagtgtcaac |
1848522 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 245 - 283
Target Start/End: Original strand, 395891 - 395929
Alignment:
| Q |
245 |
ataatttttggacaatttcatcttttatacttacattat |
283 |
Q |
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| T |
395891 |
ataattttttgacaatttcatctttcatacttacattat |
395929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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