View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21567_low_3 (Length: 434)
Name: NF21567_low_3
Description: NF21567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21567_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 402; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 402; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 31841379 - 31840962
Alignment:
| Q |
1 |
ataataatttatttagagctaaaaaagctaccaataccaaaggaaataatatttccccactatttattgtataatgaatcttgcttcatgatcggttttc |
100 |
Q |
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| T |
31841379 |
ataataatttatttaggactaaaaaagctaccaataccaaaggaaataatatttccccactatttattgtataatgaatcttgcttcatgatcggttttc |
31841280 |
T |
|
| Q |
101 |
cttattgcaaataaattattgaaaaagataagtttttgatggagtaagtgagatttgtaagccattttgattgatacgatacaatgtagttaaaccaata |
200 |
Q |
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| T |
31841279 |
cttattgcaaataaattattgaaaaagataagtttttgatggagtaagtgagatttgtaagccattttgattgatacgatacaatgtagttaaaccaatc |
31841180 |
T |
|
| Q |
201 |
aatatttaagaaagcgaagtgctaaatttacgctagttttcccaatcatttattgaattttctttggacccaaaatcatttattattgtattgtatttga |
300 |
Q |
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| T |
31841179 |
aatatttaagaaagcgaagtgctaaatttacgctagttttcccaatcatttattgaattttctttggacccaaaatcatttattactgtattgtatttga |
31841080 |
T |
|
| Q |
301 |
aaatggaaagatccataactaaaggaaacaaaaggtgccatggatatattttaccacttgataagtgtcggcaacatagtatcttgattacttttaaatg |
400 |
Q |
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| T |
31841079 |
aaatggaaagatccataactaaaggaaacaaaaggtgccatggatatattttaccacttgataagtgtcggcaacatagtatcttgattacttttaaatg |
31840980 |
T |
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| Q |
401 |
ctctttgaagagtgtata |
418 |
Q |
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| T |
31840979 |
ctctttgaagagtgtata |
31840962 |
T |
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