View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21567_low_4 (Length: 305)
Name: NF21567_low_4
Description: NF21567
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21567_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 107; Significance: 1e-53; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 141 - 296
Target Start/End: Original strand, 31841464 - 31841611
Alignment:
| Q |
141 |
aataaaaagtttaagttgctcctttggcacaaatcacatgtggttgttgccttgttggcatagaaatcaacagataaaatatgtgtcgtgcgtttcttct |
240 |
Q |
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| T |
31841464 |
aataaaaagtttaagttgctcctttggcacaaatcacatgtggttgtta--------gcatagaaatcaacggataaaatatgtgtggtgcgtttcttct |
31841555 |
T |
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| Q |
241 |
ctcaatatttcgtaaagttaagcattatccgtgtttcaattactatattttgtctt |
296 |
Q |
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| T |
31841556 |
ctcaatatttcgtaaagttaagcattatccgtgtttcaattacgatattttttctt |
31841611 |
T |
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Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 58 - 140
Target Start/End: Original strand, 31841496 - 31841577
Alignment:
| Q |
58 |
atcacatgtggttgttggcatataaatcaacggataaaatatgtgtcgtgagtttcttctctcaaatattttgtaaagttaag |
140 |
Q |
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| T |
31841496 |
atcacatgtggttgttagcatagaaatcaacggataaaatatgtgtggtgcgtttcttctctc-aatatttcgtaaagttaag |
31841577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 64
Target Start/End: Original strand, 31841388 - 31841458
Alignment:
| Q |
1 |
tctcatgtgtgtttcaagagcagtatta-------cgaaaatacacaacaaaaaatgcaagaatatcacat |
64 |
Q |
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| T |
31841388 |
tctcatgtgtgtttcaagagcagtgttattccttacgaaaatacacagcaagaaatgcaagaatatcacat |
31841458 |
T |
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