View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21568_high_1 (Length: 485)
Name: NF21568_high_1
Description: NF21568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21568_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 14 - 475
Target Start/End: Complemental strand, 1426000 - 1425539
Alignment:
| Q |
14 |
gaaagtaccgttcatgttgaaagaannnnnnnatcgaacatcaataaagctgatgatgtttggtggtaaacaatcagcacaaacataaattaagcatagt |
113 |
Q |
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|||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||| |
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| T |
1426000 |
gaaagtaccgttcacgttgaaagaatttttttatcgaacatcaataaagctgatgatgtttggtggtaaacaaccagcaaaaacataaattaagcatagt |
1425901 |
T |
|
| Q |
114 |
agatatgaggaagttgtgttcgatttatagtaagattagacgggatagaattagagctaacatgaacataaatttatgggacaataatacttgggtttac |
213 |
Q |
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||||||||||| |||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1425900 |
agatatgaggacgttgtgttggatgtatagtaagattagacggaatagaattagagctaacatgaacataaatttatgggacaataatacttgggtttac |
1425801 |
T |
|
| Q |
214 |
ttggtgactgaagattacgtggatcttaacctacatctaaaccttctaatacttctatcaagttacataatgatgataatacacattggtgatattcata |
313 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1425800 |
ttggtgactgaagattacttggatcttaacctacatctaaaccttctaatacttccatcaagttacataatgatgataatacacattggtgatattcata |
1425701 |
T |
|
| Q |
314 |
cttacagaagactcattcattgaatttatcatctcacactacataactagatatcatgcaacaacttggctaattcttatccaaacccacaaatattcat |
413 |
Q |
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|||||| |||||| |||||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1425700 |
cttacaaaagacttattcattgaattcattatctcacattacataactagatatcatgcaacaacttggctaattcttatccaaacccacaaatattcat |
1425601 |
T |
|
| Q |
414 |
tatagtactgcttgtagagttttcaaataccttaagcattggcttgttcatggtctattctt |
475 |
Q |
| |
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| T |
1425600 |
tatagtactgcttgtagagttttcaaataccttaagcattggcttgttcatggtctattctt |
1425539 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 46 - 457
Target Start/End: Complemental strand, 1448058 - 1447637
Alignment:
| Q |
46 |
atcgaacatcaataaagctgatgatgtttggtggtaaacaatcagcacaaacataaattaagcatagtagatatgaggaagttgtgttcgatttatagta |
145 |
Q |
| |
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|||||||||||||||| |||||||||||||||||||||||| || ||||||||||||||||||||| ||||||||| ||||||||||| ||| | ||||| |
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| T |
1448058 |
atcgaacatcaataaaactgatgatgtttggtggtaaacaaccaacacaaacataaattaagcataatagatatgaagaagttgtgttggatgtgtagta |
1447959 |
T |
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| Q |
146 |
agattagacgggatagaattagagctaacatgaacataaatttatgggacaataatacttgggtttacttggtgactgaagattacgtggatcttaacct |
245 |
Q |
| |
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||| |||| |||||| ||||||||||||| |||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| ||||||||||||| |
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| T |
1447958 |
agactagaggggataaaattagagctaac-tgaacataaatttatgggacaatactacttaggtttacttggtgactgaagattacttggatcttaacct |
1447860 |
T |
|
| Q |
246 |
acatctaaaccttctaatacttctatcaagttacataatgatgataataca--cattggtgatattcatacttacagaagactcattcattgaatttatc |
343 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| ||||||||||||||||||| | |
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| T |
1447859 |
acatctaaaccttctaatacttctatcaagttacataatgatgataatacacccattggtgatattcctacttacaaaagactcattcattgaattcagt |
1447760 |
T |
|
| Q |
344 |
atctcacactacataactagatatca--tgc-------aacaacttggctaattcttatccaaacccacaaatattcattatagtactgcttgtagagtt |
434 |
Q |
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|||||||| ||||||||||||||||| | | |||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
1447759 |
atctcacattacataactagatatcaccttcatcagttaacaacttagctaattcttatccaaacccacaaatattcattgtagtactgcttgtagagtt |
1447660 |
T |
|
| Q |
435 |
ttcaaataccttaagcattggct |
457 |
Q |
| |
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||||||||||||||||||||||| |
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| T |
1447659 |
ttcaaataccttaagcattggct |
1447637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 68 - 349
Target Start/End: Complemental strand, 1470512 - 1470229
Alignment:
| Q |
68 |
gatgtttggtggtaaacaatcagcacaaacataaattaagcatagtagatatgaggaagttgtgttcgatttatagtaagattagacgggatagaattag |
167 |
Q |
| |
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||||||||||||||| ||| || |||||||||||||||||||||||||| || |||||||||| | | | | ||||| ||||| ||||||||||| |
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| T |
1470512 |
gatgtttggtggtaagcaaccaacacaaacataaattaagcatagtagagatacaaaagttgtgttgggtatgttgtaaggctagacatgatagaattag |
1470413 |
T |
|
| Q |
168 |
agctaacatgaacataaatttatgggacaataatacttgggtttacttggtgactgaagattacgtggatcttaacctacatctaaaccttctaatactt |
267 |
Q |
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| |||||||||||||||||||||||| ||||| ||||| |||||||||| |||||||||||||| ||||||| |||||| ||| | ||||| |||||||| |
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| T |
1470412 |
acctaacatgaacataaatttatggggcaatactacttaggtttacttgatgactgaagattacttggatctaaacctaaatcaagaccttataatactt |
1470313 |
T |
|
| Q |
268 |
ctatcaagttacataatgatgataataca--cattggtgatattcatacttacagaagactcattcattgaatttatcatctca |
349 |
Q |
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| T |
1470312 |
ccatcaagttatataatgatgataatacacccattggtgatattcctacttacaaaagaccccttcattgaattcattatctca |
1470229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 70 - 154
Target Start/End: Complemental strand, 52442909 - 52442825
Alignment:
| Q |
70 |
tgtttggtggtaaacaatcagcacaaacataaattaagcatagtagatatgaggaagttgtgttcgatttatagtaagattagac |
154 |
Q |
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||||||||||||| || || |||||| ||||||||||| ||| ||| ||||||| |||||||| ||| | | |||||| ||||| |
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| T |
52442909 |
tgtttggtggtaatgaaacaacacaaaaataaattaagcgtagcagacatgaggatgttgtgttggatgtgtggtaagactagac |
52442825 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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