View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21568_high_18 (Length: 205)
Name: NF21568_high_18
Description: NF21568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21568_high_18 |
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Alignment Details
Target: chr5 (Bit Score: 126; Significance: 4e-65; HSPs: 5)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 18 - 155
Target Start/End: Original strand, 13787871 - 13788008
Alignment:
| Q |
18 |
catagggaatcgagaacaatacttacaaattttaaaaatatttcattaaaaggaaaattattaggaagttctctcattttataggaatcgtgaacaatac |
117 |
Q |
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| T |
13787871 |
catagggaatcgtgaacaatacttaaaaattttaaaaatatttcattaaaaggaaaattattaggaagttctctcattttataggaatcgtgaacaatac |
13787970 |
T |
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| Q |
118 |
ttacaaattttagaaatattacattaaaaggaaaatta |
155 |
Q |
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| T |
13787971 |
atacaaattttagaaatattacattaaaaggaaaatta |
13788008 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 59; E-Value: 3e-25
Query Start/End: Original strand, 86 - 152
Target Start/End: Original strand, 13787803 - 13787869
Alignment:
| Q |
86 |
ttctctcattttataggaatcgtgaacaatacttacaaattttagaaatattacattaaaaggaaaa |
152 |
Q |
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| T |
13787803 |
ttctctcattttatagaaaacgtgaacaatacttacaaattttagaaatattacattaaaaggaaaa |
13787869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 101 - 183
Target Start/End: Original strand, 13787876 - 13787959
Alignment:
| Q |
101 |
ggaatcgtgaacaatacttacaaattttagaaatattacattaaaaggaaaattaaagggaa-tcctctcattttataggaatc |
183 |
Q |
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| T |
13787876 |
ggaatcgtgaacaatacttaaaaattttaaaaatatttcattaaaaggaaaattattaggaagttctctcattttataggaatc |
13787959 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 23 - 84
Target Start/End: Original strand, 13787954 - 13788015
Alignment:
| Q |
23 |
ggaatcgagaacaatacttacaaattttaaaaatatttcattaaaaggaaaattattaggaa |
84 |
Q |
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| T |
13787954 |
ggaatcgtgaacaatacatacaaattttagaaatattacattaaaaggaaaattataaggaa |
13788015 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 31 - 74
Target Start/End: Original strand, 13787826 - 13787869
Alignment:
| Q |
31 |
gaacaatacttacaaattttaaaaatatttcattaaaaggaaaa |
74 |
Q |
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| T |
13787826 |
gaacaatacttacaaattttagaaatattacattaaaaggaaaa |
13787869 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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