View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21568_high_2 (Length: 445)
Name: NF21568_high_2
Description: NF21568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21568_high_2 |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 1 - 445
Target Start/End: Complemental strand, 41921321 - 41920878
Alignment:
| Q |
1 |
agcagccgataaagaagagatacattccaacgccaagttctaacaagtgaatcctatttgatatttgagaacaaagataacaaatgtaggtaagtagaag |
100 |
Q |
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| T |
41921321 |
agcagccgataaagaagagatacattccaacgccaagttctaacaagtgaatcctatttgatatttgagaacaaagataacaaatgtaggtaagtagaag |
41921222 |
T |
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| Q |
101 |
taccatataacatttactatttagaaatcattgaatgccagagtttttaaaagtggtttgcaactgccatccgagtcacgacataaaagtttctgcaaca |
200 |
Q |
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| T |
41921221 |
taccatataacatttactatttagaaatcattgaatgccagagtttttaaaagtggtttgcaactgccatccgagtcacgacataaaagtttctgcaaca |
41921122 |
T |
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| Q |
201 |
tctatgcgaccacaatttactattggtcgcatcagttgcttagattgcgatgctctaaatattaaagattgtgacacaatcatgattaaaaaactagttg |
300 |
Q |
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| T |
41921121 |
tctatgcgaccacaatttactattggtcgcatcagttgcttaaattgcgatgctctaaatattaaagattgtgacacaatcatgattaaaaaactagttg |
41921022 |
T |
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| Q |
301 |
aatgctaccaaataactaagacaatagtactgatttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgaga |
400 |
Q |
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| T |
41921021 |
aatgctatcaaataactaagacaatagtactaatttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgaga |
41920922 |
T |
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| Q |
401 |
gcatctccaagtttctcagtgacaatccattcatctcactcgact |
445 |
Q |
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| T |
41920921 |
gcatctccaagtttctcagtgacaatccattcat-tcactcgact |
41920878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 7e-19; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 334 - 434
Target Start/End: Original strand, 26829762 - 26829862
Alignment:
| Q |
334 |
tttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatccattca |
433 |
Q |
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||||||||||||| ||||||| |||||| |||| |||||| ||||| | |||||| |||||| ||||||||||||||| |||||||||||||||||| |
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| T |
26829762 |
tttatacctgtctccaatcctaaatcgaagctttttgagtcctttaccactagctttacccttgaaagcatctccaagtttttcagtgacaatccattca |
26829861 |
T |
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| Q |
434 |
t |
434 |
Q |
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| T |
26829862 |
t |
26829862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 333 - 434
Target Start/End: Original strand, 26789245 - 26789346
Alignment:
| Q |
333 |
atttatacctgtcttcaatcctgaatcgaggcttcttgagtgctttagtccctgctttagccttgagagcatctccaagtttctcagtgacaatccattc |
432 |
Q |
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|||| ||||||||| |||| | |||||| |||| |||||| ||||| || ||||| |||||||||||||||||||||| ||||||||||||||||| |
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| T |
26789245 |
atttttacctgtctacaattttaaatcgaagctttttgagttctttaccaccatctttacccttgagagcatctccaagtttttcagtgacaatccattc |
26789344 |
T |
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| Q |
433 |
at |
434 |
Q |
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|| |
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| T |
26789345 |
at |
26789346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 395 - 434
Target Start/End: Original strand, 26816137 - 26816176
Alignment:
| Q |
395 |
ttgagagcatctccaagtttctcagtgacaatccattcat |
434 |
Q |
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| T |
26816137 |
ttgagagcatctccaagtttttcagtgacaatccattcat |
26816176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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