View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21568_high_4 (Length: 324)
Name: NF21568_high_4
Description: NF21568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21568_high_4 |
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Alignment Details
Target: chr6 (Bit Score: 273; Significance: 1e-152; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 305
Target Start/End: Original strand, 29480978 - 29481282
Alignment:
| Q |
1 |
aaatttatataatcatagctcacaggaaaatgaaactatagatttgaagaataaaaaccatatagaaatggacaatgagcaaaatttatataagataaaa |
100 |
Q |
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| T |
29480978 |
aaatttatatattcatagctcacaggaaaatgaaactatagatttgaagaataaaaaccatatagaaatggacaatgagcaaaatttatataagataaaa |
29481077 |
T |
|
| Q |
101 |
gagatagagtaattatacccgtcgaaatgccacccggtcaagttagctacttgagatagagcagttttccatttaagcactttctccttgttttcatgga |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||| |
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| T |
29481078 |
gagatagagtaattatacccgtcgaaatgccacccgggcaagttagctacttgagatagagcggttttccatttaagcactttctccctgttttcatgga |
29481177 |
T |
|
| Q |
201 |
acctctcctcgtgctttacgaatgcagcttcaaaaggtccactttggtgtcgcacatgagaaggtttaatattgtaaaaaaccggaaaaataaatcgaag |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||| |||||||||||| |
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| T |
29481178 |
acctctcctcgtgctttacgaatgcagcttcaaaaggtccactttggtgtcgcacatgagaagcttcaatattgtaataaaccggaacaataaatcgaag |
29481277 |
T |
|
| Q |
301 |
gttgt |
305 |
Q |
| |
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||||| |
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| T |
29481278 |
gttgt |
29481282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 238 - 295
Target Start/End: Complemental strand, 29617869 - 29617812
Alignment:
| Q |
238 |
tccactttggtgtcgcacatgagaaggtttaatattgtaaaaaaccggaaaaataaat |
295 |
Q |
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||||||||||| ||||||||||||||| | || |||||||||||||||| ||||||| |
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| T |
29617869 |
tccactttggtttcgcacatgagaaggatctatgttgtaaaaaaccggaataataaat |
29617812 |
T |
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