View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21568_high_8 (Length: 287)

Name: NF21568_high_8
Description: NF21568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21568_high_8
NF21568_high_8
[»] chr6 (13 HSPs)
chr6 (29-271)||(31423756-31424017)
chr6 (192-259)||(27860878-27860946)
chr6 (151-196)||(15480353-15480398)
chr6 (33-196)||(11087409-11087581)
chr6 (33-91)||(14080391-14080449)
chr6 (41-91)||(19277208-19277258)
chr6 (41-151)||(22497364-22497473)
chr6 (151-188)||(3404882-3404919)
chr6 (163-196)||(12203650-12203683)
chr6 (150-195)||(18147339-18147384)
chr6 (151-196)||(19305498-19305543)
chr6 (192-232)||(9403265-9403305)
chr6 (151-195)||(31295548-31295592)
[»] scaffold0291 (3 HSPs)
scaffold0291 (33-196)||(8589-8760)
scaffold0291 (192-268)||(15351-15428)
scaffold0291 (151-196)||(15442-15487)
[»] chr7 (6 HSPs)
chr7 (33-196)||(39879294-39879466)
chr7 (35-119)||(13292221-13292305)
chr7 (32-143)||(9135435-9135546)
chr7 (192-257)||(13292055-13292121)
chr7 (192-259)||(16987022-16987090)
chr7 (55-119)||(16987190-16987254)
[»] chr4 (7 HSPs)
chr4 (33-196)||(12683693-12683864)
chr4 (192-247)||(5518633-5518689)
chr4 (193-259)||(15742083-15742150)
chr4 (151-196)||(19809735-19809780)
chr4 (55-119)||(15742251-15742315)
chr4 (151-196)||(19643736-19643781)
chr4 (151-196)||(47253311-47253356)
[»] scaffold0140 (1 HSPs)
scaffold0140 (33-195)||(6205-6376)
[»] scaffold0074 (1 HSPs)
scaffold0074 (52-143)||(35179-35270)
[»] scaffold0002 (2 HSPs)
scaffold0002 (34-144)||(379624-379734)
scaffold0002 (151-195)||(121024-121068)
[»] chr3 (11 HSPs)
chr3 (33-151)||(431382-431500)
chr3 (33-119)||(20622313-20622399)
chr3 (153-195)||(7835587-7835629)
chr3 (151-196)||(13085085-13085130)
chr3 (151-196)||(17143761-17143806)
chr3 (32-119)||(13932853-13932940)
chr3 (33-76)||(17143890-17143933)
chr3 (33-76)||(17485765-17485808)
chr3 (151-196)||(28715500-28715545)
chr3 (151-195)||(1770859-1770903)
chr3 (192-259)||(25496031-25496099)
[»] scaffold0360 (1 HSPs)
scaffold0360 (151-196)||(13956-14001)
[»] chr2 (9 HSPs)
chr2 (31-196)||(3586268-3586442)
chr2 (34-193)||(15825063-15825230)
chr2 (34-119)||(15390683-15390768)
chr2 (151-196)||(19919078-19919123)
chr2 (36-196)||(20120257-20120426)
chr2 (151-196)||(36267532-36267577)
chr2 (151-195)||(18770348-18770392)
chr2 (151-196)||(12169007-12169052)
chr2 (192-259)||(15390515-15390583)
[»] chr1 (9 HSPs)
chr1 (29-143)||(26977643-26977757)
chr1 (29-87)||(23280390-23280448)
chr1 (151-196)||(5671804-5671849)
chr1 (151-196)||(12177420-12177465)
chr1 (41-118)||(14255129-14255206)
chr1 (41-151)||(4601553-4601663)
chr1 (151-196)||(22414809-22414854)
chr1 (151-196)||(33101519-33101564)
chr1 (192-259)||(4601417-4601485)
[»] scaffold0380 (1 HSPs)
scaffold0380 (51-119)||(6958-7026)
[»] chr8 (13 HSPs)
chr8 (33-75)||(21416645-21416687)
chr8 (151-196)||(6928102-6928147)
chr8 (151-196)||(13754792-13754837)
chr8 (151-196)||(13765023-13765068)
chr8 (151-188)||(21416772-21416809)
chr8 (151-196)||(24070886-24070931)
chr8 (155-196)||(30477679-30477720)
chr8 (192-259)||(21416831-21416899)
chr8 (41-91)||(24507373-24507422)
chr8 (151-196)||(17698297-17698342)
chr8 (41-118)||(20055494-20055571)
chr8 (192-259)||(11776173-11776241)
chr8 (151-195)||(26916911-26916955)
[»] chr5 (6 HSPs)
chr5 (151-196)||(22903127-22903172)
chr5 (152-196)||(20025318-20025362)
chr5 (155-196)||(27083250-27083291)
chr5 (192-259)||(22865854-22865922)
chr5 (55-119)||(25537334-25537398)
chr5 (192-259)||(26348021-26348089)
[»] scaffold0505 (1 HSPs)
scaffold0505 (151-196)||(7919-7964)
[»] scaffold0023 (1 HSPs)
scaffold0023 (151-196)||(95822-95867)


Alignment Details
Target: chr6 (Bit Score: 175; Significance: 3e-94; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 29 - 271
Target Start/End: Complemental strand, 31424017 - 31423756
Alignment:
Q  29 atgaatgag-tgacaacggtggcggataatgctccggtgtgacggtaacggtttccggtacggcatcgttgaatcttcgtggtggaacgaaatgtccttg 127  Q
    ||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||    
T  31424017 atgaatgaggtgacaacggtggcggataatgctccggtgtgacagtaacggtttccggtacggcaacgttgaatcttcgtggtggaacgaaaggtccttg 31423918  T
Q  128 tagacacgttagcacttcgacgctaatgaaactgagaaagagtatgtagaaagtgttgtgagaag------------------tgaagcaagtgcaccct 209  Q
     ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                  |||||||||||||||||    
T  31423917 cagacacgttagcacttcgacgctaatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaatcatgtcttgagggtgaagcaagtgcaccct 31423818  T
Q  210 tatataggtgcgtgttgggcataccgtgtccgggttatgcgacgtgtgatcggggacaatta 271  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31423817 tatataggcgcgtgttgggcataccgtgtccgggttatgcgacgtgtgatcggggacaatta 31423756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 259
Target Start/End: Complemental strand, 27860946 - 27860878
Alignment:
Q  192 gtgaagcaagtgcacccttatataggtgcgtgttgggcat-accgtgtccgggttatgcgacgtgtgat 259  Q
    ||||||||||| ||||||| |||||| ||||||||| ||| ||||| ||||||||||||| ||||||||    
T  27860946 gtgaagcaagttcacccttttataggcgcgtgttggccataaccgtctccgggttatgcggcgtgtgat 27860878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 15480398 - 15480353
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    |||||||||||||||| ||| ||||||||||||||||| |||||||    
T  15480398 taatgaaactgagaaaaagtgtgtagaaagtgttgtgaaaagtgaa 15480353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 33 - 196
Target Start/End: Original strand, 11087409 - 11087581
Alignment:
Q  33 atgagtgacaacggtggcggataatgctccggtgtgacggtaacggtttccggtacggcatcgttgaatcttcgtggtggaacgaaatgtccttgtagac 132  Q
    ||||||| ||||||||  ||||||||||| ||||||| ||||| || |||  || ||||| || ||| |||||| ||||||||||||  |   || ||||    
T  11087409 atgagtggcaacggtgaaggataatgctctggtgtgatggtaaaggcttcttgtgcggcagcgctgagtcttcgcggtggaacgaaagctgtctgcagac 11087508  T
Q  133 acgttagcacttcgacgc---------taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    || ||||||||| ||| |         ||||| |||||||||||||||||||||  ||||||||| |||||||    
T  11087509 acattagcactttgacccttaagtcagtaatgtaactgagaaagagtatgtagattgtgttgtgaaaagtgaa 11087581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 33 - 91
Target Start/End: Original strand, 14080391 - 14080449
Alignment:
Q  33 atgagtgacaacggtggcggataatgctccggtgtgacggtaacggtttccggtacggc 91  Q
    ||||||||||| ||||||||| | |||| || ||||| ||| |||||||||||||||||    
T  14080391 atgagtgacaatggtggcggaaagtgcttcgatgtgatggtgacggtttccggtacggc 14080449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Complemental strand, 19277258 - 19277208
Alignment:
Q  41 caacggtggcggataatgctccggtgtgacggtaacggtttccggtacggc 91  Q
    |||||| ||| || |||||| || |||||||||||||||||||||||||||    
T  19277258 caacggcggctgagaatgcttcgatgtgacggtaacggtttccggtacggc 19277208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 151
Target Start/End: Complemental strand, 22497473 - 22497364
Alignment:
Q  41 caacggtggcggataatgctccggtgtgacggtaacggtttccggtacggcatcgttgaatcttcgtggtggaacgaaatgtccttgtagacacgttagc 140  Q
    |||||||||| || ||||||||| || | |||||| || ||||| | ||||  || ||| |||||| | |||||||||| || |||| ||||||||||||    
T  22497473 caacggtggcagagaatgctccgatg-gtcggtaatggcttccgatgcggcggcgatgagtcttcgcgatggaacgaaaggtgcttgcagacacgttagc 22497375  T
Q  141 acttcgacgct 151  Q
    ||| |||||||    
T  22497374 actccgacgct 22497364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 188
Target Start/End: Complemental strand, 3404919 - 3404882
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtga 188  Q
    ||||| |||||||||||||| |||||||||||||||||    
T  3404919 taatggaactgagaaagagtgtgtagaaagtgttgtga 3404882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 163 - 196
Target Start/End: Complemental strand, 12203683 - 12203650
Alignment:
Q  163 gaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    |||||||||||||||||||||||||| |||||||    
T  12203683 gaaagagtatgtagaaagtgttgtgaaaagtgaa 12203650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 18147339 - 18147384
Alignment:
Q  150 ctaatgaaactgagaaagagtatgtagaaagtgttgtgagaagtga 195  Q
    |||||| ||| |||||||||| ||||||||||||||||| ||||||    
T  18147339 ctaatggaaccgagaaagagtgtgtagaaagtgttgtgaaaagtga 18147384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 19305498 - 19305543
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    ||||| ||||||| |||||| ||||||||||||||||| |||||||    
T  19305498 taatggaactgagtaagagtgtgtagaaagtgttgtgaaaagtgaa 19305543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 232
Target Start/End: Original strand, 9403265 - 9403305
Alignment:
Q  192 gtgaagcaagtgcacccttatataggtgcgtgttgggcata 232  Q
    ||||||||||| |||||||||||||||||| ||||| ||||    
T  9403265 gtgaagcaagttcacccttatataggtgcgcgttggccata 9403305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 31295592 - 31295548
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtga 195  Q
    |||||||||||||||||||| ||||  ||||||||||| ||||||    
T  31295592 taatgaaactgagaaagagtgtgtatgaagtgttgtgaaaagtga 31295548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 57; Significance: 8e-24; HSPs: 3)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 33 - 196
Target Start/End: Complemental strand, 8760 - 8589
Alignment:
Q  33 atgagtgacaacggtggcggataatgctccggtgtgacggtaacggtttccggtacggcatcgttgaatcttcgtggtggaacgaaatgtccttgtagac 132  Q
    ||||||||||||||||||||||||||||||| |||||| ||||| |||||| |||||||  |||||| |||| | |||||||  ||| ||  ||| || |    
T  8760 atgagtgacaacggtggcggataatgctccgctgtgacagtaacagtttccagtacggcggcgttgagtctttgcggtggaataaaaggtgtttgcag-c 8662  T
Q  133 acgttagcacttcgacgc---------taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    ||||||||||||||||||         |||||||||||| ||| ||| ||||||||||||||||| |||||||    
T  8661 acgttagcacttcgacgctcaagtcagtaatgaaactgaaaaacagtgtgtagaaagtgttgtgaaaagtgaa 8589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 192 - 268
Target Start/End: Complemental strand, 15428 - 15351
Alignment:
Q  192 gtgaagcaagtgcacccttatataggtgcgtgttgggcat-accgtgtccgggttatgcgacgtgtgatcggggacaa 268  Q
    ||||||||||| |||||||||||||||||  ||| | ||| ||||||||||| ||||||||| ||||||  |||||||    
T  15428 gtgaagcaagttcacccttatataggtgcacgttagtcataaccgtgtccggattatgcgacatgtgattagggacaa 15351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 15487 - 15442
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    ||||| |||||||||||||||| ||||||||||||||| |||||||    
T  15487 taatggaactgagaaagagtatctagaaagtgttgtgaaaagtgaa 15442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 33 - 196
Target Start/End: Original strand, 39879294 - 39879466
Alignment:
Q  33 atgagtgacaacggtggcggataatgctccggtgtgacggtaacggtttccggtacggcatcgttgaatcttcgtggtggaacgaaatgtccttgtagac 132  Q
    ||||| ||||||||||| ||| | ||||||||||||||||| | |||||||| ||||| |  | ||||||||||||||||||||||| || | || ||||    
T  39879294 atgagagacaacggtggtggaaagtgctccggtgtgacggtgatggtttccgatacggtaatgatgaatcttcgtggtggaacgaaaggtgcctgcagac 39879393  T
Q  133 acgttagcacttcgacgc---------taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    |||||| |||||  ||||         |||||||||||||||||||| |||| |||||||||| | |||||||    
T  39879394 acgttaacactttaacgctcaagtcagtaatgaaactgagaaagagtgtgtaaaaagtgttgtaaaaagtgaa 39879466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 35 - 119
Target Start/End: Complemental strand, 13292305 - 13292221
Alignment:
Q  35 gagtgacaacggtggcggataatgctccggtgtgacggtaacggtttccggtacggcatcgttgaatcttcgtggtggaacgaaa 119  Q
    |||||||||||| ||| || ||||||||| |||||||||||| |||||||| |||||  || ||| |||||||||||||| ||||    
T  13292305 gagtgacaacggcggcagagaatgctccgatgtgacggtaacagtttccggcacggcggcgatgagtcttcgtggtggaaggaaa 13292221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 32 - 143
Target Start/End: Complemental strand, 9135546 - 9135435
Alignment:
Q  32 aatgagtgacaacggtggcggataatgctccggtgtgacggtaacggtttccggtacggcatcgttgaatcttcgtggtggaacgaaatgtccttgtaga 131  Q
    |||||||| || | |||||| |||||||| |||||||||||||||||||||| |||||||   ||| | |||||  |||||||||||| || | | |||     
T  9135546 aatgagtggcagcagtggcgaataatgcttcggtgtgacggtaacggtttccagtacggcggtgttaagtcttcacggtggaacgaaaggtgcatatagg 9135447  T
Q  132 cacgttagcact 143  Q
    ||||||||||||    
T  9135446 cacgttagcact 9135435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 257
Target Start/End: Complemental strand, 13292121 - 13292055
Alignment:
Q  192 gtgaagcaagtgcacccttatataggtgcgtgttgggcat-accgtgtccgggttatgcgacgtgtg 257  Q
    ||||||||||| |||| ||||||||| ||| ||||| ||| ||||| ||||||||||||| ||||||    
T  13292121 gtgaagcaagttcaccattatataggcgcgcgttggccataaccgtctccgggttatgcggcgtgtg 13292055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 259
Target Start/End: Complemental strand, 16987090 - 16987022
Alignment:
Q  192 gtgaagcaagtgcacccttatataggtgcgtgttgggcat-accgtgtccgggttatgcgacgtgtgat 259  Q
    ||||||||||| |||||||||||||| ||| ||||| ||| ||||| ||||| |||||||  |||||||    
T  16987090 gtgaagcaagttcacccttatataggcgcgcgttggccataaccgtctccggattatgcggtgtgtgat 16987022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 16987254 - 16987190
Alignment:
Q  55 aatgctccggtgtgacggtaacggtttccggtacggcatcgttgaatcttcgtggtggaacgaaa 119  Q
    ||||||||||||||||| |||||| ||| ||||||||  |  ||| |||||| ||||||||||||    
T  16987254 aatgctccggtgtgacgctaacggcttctggtacggcggcaatgagtcttcgcggtggaacgaaa 16987190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 33 - 196
Target Start/End: Original strand, 12683693 - 12683864
Alignment:
Q  33 atgagtgacaacggtggcggataatgctccggtgtgacggtaacggtttccggtacggcatcgttgaatcttcgtggtggaacgaaatgtccttgtagac 132  Q
    ||||||| ||| |||||||||||||| ||| |||||||||| |||||||||| |||| |  || ||| |||| | |||||||||||| || | || || |    
T  12683693 atgagtggcaaaggtggcggataatgttccagtgtgacggtgacggtttccg-tacgacgacgatgagtctttgcggtggaacgaaaggtgcctgcaggc 12683791  T
Q  133 acgttagcacttcgacgct---------aatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    ||||||||||| | |||||         ||||||||||||||||||| ||||||||||||||||| |||||||    
T  12683792 acgttagcactccaacgctcaagttagtaatgaaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaa 12683864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 5518633 - 5518689
Alignment:
Q  192 gtgaagcaagtgcacccttatataggtgcgtgttgggcat-accgtgtccgggttat 247  Q
    ||||||||||| |||||||||||||| ||||||||||||| ||||| ||||||||||    
T  5518633 gtgaagcaagttcacccttatataggcgcgtgttgggcataaccgtctccgggttat 5518689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 193 - 259
Target Start/End: Complemental strand, 15742150 - 15742083
Alignment:
Q  193 tgaagcaagtgcacccttatataggtgcgtgttgggcat-accgtgtccgggttatgcgacgtgtgat 259  Q
    |||||||| | |||||||||||||| ||||||||| ||| ||||| ||||||||||||| ||||||||    
T  15742150 tgaagcaaattcacccttatataggcgcgtgttggccataaccgtctccgggttatgcggcgtgtgat 15742083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 19809735 - 19809780
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    |||||||||| ||||||||| ||||||||||||||||| |||||||    
T  19809735 taatgaaactaagaaagagtgtgtagaaagtgttgtgaaaagtgaa 19809780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 119
Target Start/End: Complemental strand, 15742315 - 15742251
Alignment:
Q  55 aatgctccggtgtgacggtaacggtttccggtacggcatcgttgaatcttcgtggtggaacgaaa 119  Q
    |||||||||||||||||||||||||||| |  |||||  || ||| ||||||||||||| |||||    
T  15742315 aatgctccggtgtgacggtaacggtttctgacacggcgacgatgagtcttcgtggtggagcgaaa 15742251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 19643736 - 19643781
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    ||||| |||||||||||||| |||||||||| |||||| |||||||    
T  19643736 taatggaactgagaaagagtgtgtagaaagtcttgtgaaaagtgaa 19643781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 47253311 - 47253356
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    ||||| |||||||||||||| |||| |||||||||||| |||||||    
T  47253311 taatggaactgagaaagagtgtgtaaaaagtgttgtgaaaagtgaa 47253356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0140 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0140
Description:

Target: scaffold0140; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 33 - 195
Target Start/End: Original strand, 6205 - 6376
Alignment:
Q  33 atgagtgacaacggtggcggataatgctccggtgtgacggtaacggtttccggtacggcatcgttgaatcttcgtggtggaacgaaatgtccttgtagac 132  Q
    ||||||| |||||||| |||||||||||| |||||||||||||||  || |||||||||| |||||| |||  |  ||||||| ||| ||  ||| || |    
T  6205 atgagtggcaacggtgacggataatgctctggtgtgacggtaacgactttcggtacggcaacgttgagtctctgcagtggaacaaaaggtgtttgcaggc 6304  T
Q  133 acgttagcacttcgacgc---------taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtga 195  Q
    ||||||||||||||| ||         ||||| |||||||||| ||| ||||||||||||||||| ||||||    
T  6305 acgttagcacttcgaagctcaagtcagtaatggaactgagaaatagtgtgtagaaagtgttgtgaaaagtga 6376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0074 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0074
Description:

Target: scaffold0074; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 52 - 143
Target Start/End: Original strand, 35179 - 35270
Alignment:
Q  52 gataatgctccggtgtgacggtaacggtttccggtacggcatcgttgaatcttcgtggtggaacgaaatgtccttgtagacacgttagcact 143  Q
    ||||| |||||||||||| |||||||| ||||||||||||  |||||| ||||||| ||| |||||||||| |||| || ||||||||||||    
T  35179 gataaagctccggtgtgatggtaacggcttccggtacggcggcgttgagtcttcgtagtgcaacgaaatgtgcttgcaggcacgttagcact 35270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 34 - 144
Target Start/End: Original strand, 379624 - 379734
Alignment:
Q  34 tgagtgacaacggtggcggataatgctccggtgtgacggtaacggtttccggtacggcatcgttgaatcttcgtggtggaacgaaatgtccttgtagaca 133  Q
    |||||| |||| ||||| || |||||||||||||||| ||||| | ||||||||||||  || ||| |||||| |||||||||||| || | | ||| ||    
T  379624 tgagtggcaacagtggcagagaatgctccggtgtgactgtaacagcttccggtacggcgacgatgagtcttcgcggtggaacgaaaggtgcatctaggca 379723  T
Q  134 cgttagcactt 144  Q
    |||||||||||    
T  379724 cgttagcactt 379734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 121068 - 121024
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtga 195  Q
    ||||| |||||||||||||| |||| |||||||||||| ||||||    
T  121068 taatggaactgagaaagagtgtgtataaagtgttgtgaaaagtga 121024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 33 - 151
Target Start/End: Complemental strand, 431500 - 431382
Alignment:
Q  33 atgagtgacaacggtggcggataatgctccggtgtgacggtaacggtttccggtacggcatcgttgaatcttcgtggtggaacgaaatgtccttgtagac 132  Q
    ||||||| ||||||| || |||||||||||||| |||||||||||| |||||||| |     ||||| |||||| ||||||| |||| || | |  ||||    
T  431500 atgagtggcaacggttgcagataatgctccggtttgacggtaacggcttccggtaggctggtgttgagtcttcgcggtggaaagaaaggtgcctacagac 431401  T
Q  133 acgttagcacttcgacgct 151  Q
    |||||||||||||||||||    
T  431400 acgttagcacttcgacgct 431382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 33 - 119
Target Start/End: Original strand, 20622313 - 20622399
Alignment:
Q  33 atgagtgacaacggtggcggataatgctccggtgtgacggtaacggtttccggtacggcatcgttgaatcttcgtggtggaacgaaa 119  Q
    |||||||||||||||||  ||||||| | ||||||||||| |||| |||||||||||||  |||||| ||||||  ||| |||||||    
T  20622313 atgagtgacaacggtggtagataatgtttcggtgtgacggcaacgatttccggtacggccgcgttgagtcttcgcagtgaaacgaaa 20622399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 195
Target Start/End: Complemental strand, 7835629 - 7835587
Alignment:
Q  153 atgaaactgagaaagagtatgtagaaagtgttgtgagaagtga 195  Q
    |||||||||||||| ||||||||||||||||||||| ||||||    
T  7835629 atgaaactgagaaatagtatgtagaaagtgttgtgaaaagtga 7835587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 13085130 - 13085085
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    |||||||||||||||||| |||||||||||| |||||| |||||||    
T  13085130 taatgaaactgagaaagaatatgtagaaagtattgtgaaaagtgaa 13085085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 17143806 - 17143761
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    ||||| |||||||||||||| ||||||||||||||||| |||||||    
T  17143806 taatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaa 17143761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 32 - 119
Target Start/End: Original strand, 13932853 - 13932940
Alignment:
Q  32 aatgagtgacaacggtggcggataatgctccggtgtgacggtaacggtttccggtacggcatcgttgaatcttcgtggtggaacgaaa 119  Q
    ||||| || |||||||||||||||||||||||||| || |||||||   ||||||| | |  | |||  |||||||||||||||||||    
T  13932853 aatgactggcaacggtggcggataatgctccggtgagatggtaacgacatccggtatgactactttgggtcttcgtggtggaacgaaa 13932940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 17143933 - 17143890
Alignment:
Q  33 atgagtgacaacggtggcggataatgctccggtgtgacggtaac 76  Q
    ||||||| ||||||||||||||||| |||||||||||||| |||    
T  17143933 atgagtgtcaacggtggcggataattctccggtgtgacggcaac 17143890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 33 - 76
Target Start/End: Complemental strand, 17485808 - 17485765
Alignment:
Q  33 atgagtgacaacggtggcggataatgctccggtgtgacggtaac 76  Q
    ||||||| |||||| ||||||||||||||| |||||||||||||    
T  17485808 atgagtggcaacggcggcggataatgctccagtgtgacggtaac 17485765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 28715545 - 28715500
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    ||||| |||||||||||||| |||| |||||||||||| |||||||    
T  28715545 taatggaactgagaaagagtgtgtataaagtgttgtgaaaagtgaa 28715500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 1770859 - 1770903
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtga 195  Q
    ||||| ||||||| |||||| ||||||||||||||||| ||||||    
T  1770859 taatggaactgaggaagagtgtgtagaaagtgttgtgaaaagtga 1770903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 25496031 - 25496099
Alignment:
Q  192 gtgaagcaagtgcacccttatataggtgcgtgttgggcat-accgtgtccgggttatgcgacgtgtgat 259  Q
    ||||||||||| |||||||||||||| ||  ||||  ||| ||||| ||||||||||||| ||||||||    
T  25496031 gtgaagcaagttcacccttatataggcgcacgttgatcataaccgtctccgggttatgcggcgtgtgat 25496099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0360 (Bit Score: 42; Significance: 0.000000000000007; HSPs: 1)
Name: scaffold0360
Description:

Target: scaffold0360; HSP #1
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 13956 - 14001
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    |||||||||||||||||||| |||||||||||||||||||||||||    
T  13956 taatgaaactgagaaagagtgtgtagaaagtgttgtgagaagtgaa 14001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 31 - 196
Target Start/End: Original strand, 3586268 - 3586442
Alignment:
Q  31 gaatgagtgacaacggtggcggataatgctccggtgtgacggtaacggtttccggtacggcatcgttgaatcttcgtggtggaacgaaatgtccttgtag 130  Q
    |||||||| ||||||||||  | || ||||||||||||||||| | |||||||||||||||  |||||| |||| | ||||||| |||| || | ||  |    
T  3586268 gaatgagtcacaacggtggttgttactgctccggtgtgacggtgaaggtttccggtacggcgacgttgagtctttgcggtggaatgaaaggtgcatgccg 3586367  T
Q  131 acacgttagcacttcgacgc---------taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
     |||||||| ||| ||||||         ||||| |||||||||| |||  |||||||||||||||| |||||||    
T  3586368 gcacgttaggactccgacgctcaagtcagtaatggaactgagaaaaagtgagtagaaagtgttgtgaaaagtgaa 3586442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 34 - 193
Target Start/End: Original strand, 15825063 - 15825230
Alignment:
Q  34 tgagtgacaacggtggcggataatgctccggtgtgacggtaacggtttccggtacggcatcgtt-gaatcttcgtggtggaacgaaatgtccttgtagac 132  Q
    ||||||||||||||||| || |||| |||||||||||| ||| || | |||| |||||   ||  || |||| |||||||||||||||||   || || |    
T  15825063 tgagtgacaacggtggcagagaatgttccggtgtgacgataatggctaccggcacggcg--gtaagagtctttgtggtggaacgaaatgtgtctgcaggc 15825160  T
Q  133 acgttagcacttcgacgct---------aatgaaactgagaaagagtatgtagaaagtgttgtgagaagt 193  Q
    |||||||||||| ||||||         |||| |||||||||||||| ||||||||||||||||| ||||    
T  15825161 acgttagcactttgacgctcaagtcggtaatggaactgagaaagagtgtgtagaaagtgttgtgaaaagt 15825230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 34 - 119
Target Start/End: Complemental strand, 15390768 - 15390683
Alignment:
Q  34 tgagtgacaacggtggcggataatgctccggtgtgacggtaacggtttccggtacggcatcgttgaatcttcgtggtggaacgaaa 119  Q
    |||||| |||||||| | || |||||||  ||||||||||||||| |||||| |||||| || ||| |||||| | ||||||||||    
T  15390768 tgagtggcaacggtgccagagaatgctctagtgtgacggtaacggcttccggcacggcagcgatgagtcttcgcgatggaacgaaa 15390683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 19919123 - 19919078
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    ||||| || ||||||||||||||||||||||||||||| |||||||    
T  19919123 taatggaaatgagaaagagtatgtagaaagtgttgtgaaaagtgaa 19919078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 36 - 196
Target Start/End: Original strand, 20120257 - 20120426
Alignment:
Q  36 agtgacaacggtggcggataatgctccggtgtgacggtaacggtttccggtacggcatcgttgaatcttcgtggtggaacgaaatgtccttgtagacacg 135  Q
    |||| ||||||||||||||||| |||| ||||||||||||||| || ||| |||     ||| |||||||  |||||||||||| ||   || || ||||    
T  20120257 agtggcaacggtggcggataatactccagtgtgacggtaacggctttcggcacgctggtgttaaatcttcacggtggaacgaaaggtgtctgcaggcacg 20120356  T
Q  136 ttagcacttcgacgc---------taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    |||||||| |||| |         |||||||||||||||||||| ||| ||||||| ||||| |||||||    
T  20120357 ttagcactccgactctcaagtcagtaatgaaactgagaaagagtgtgtggaaagtggtgtgataagtgaa 20120426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 36267532 - 36267577
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    |||||||||||||||||||| ||||||||| ||||||| |||||||    
T  36267532 taatgaaactgagaaagagtgtgtagaaagggttgtgaaaagtgaa 36267577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 151 - 195
Target Start/End: Original strand, 18770348 - 18770392
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtga 195  Q
    |||||||| ||||||||||| ||||||||||||||||| ||||||    
T  18770348 taatgaaattgagaaagagtgtgtagaaagtgttgtgaaaagtga 18770392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 12169007 - 12169052
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    ||||| |||| ||||||||| ||||||||||||||||| |||||||    
T  12169007 taatggaactaagaaagagtgtgtagaaagtgttgtgaaaagtgaa 12169052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 259
Target Start/End: Complemental strand, 15390583 - 15390515
Alignment:
Q  192 gtgaagcaagtgcacccttatataggtgcgtgttgggcat-accgtgtccgggttatgcgacgtgtgat 259  Q
    ||||||||||| |||||||||||||| ||| || || ||| |||||  ||||||||||||| |||||||    
T  15390583 gtgaagcaagttcacccttatataggcgcgcgtaggccataaccgtccccgggttatgcgatgtgtgat 15390515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 29 - 143
Target Start/End: Original strand, 26977643 - 26977757
Alignment:
Q  29 atgaatgagtgacaacggtggcggataatgctccggtgtgacggtaacggtttccggtacggcatcgttgaatcttcgtggtggaacgaaatgtccttgt 128  Q
    ||||||||||| ||||||||||||| | ||||  ||| |||| ||||||||||||||||| ||   | |||||||| | |||||||||||| || | ||     
T  26977643 atgaatgagtggcaacggtggcggaaagtgctatggtatgacagtaacggtttccggtacagcggtgatgaatctttgcggtggaacgaaaggtgcctgc 26977742  T
Q  129 agacacgttagcact 143  Q
    || ||||||||||||    
T  26977743 aggcacgttagcact 26977757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 29 - 87
Target Start/End: Complemental strand, 23280448 - 23280390
Alignment:
Q  29 atgaatgagtgacaacggtggcggataatgctccggtgtgacggtaacggtttccggta 87  Q
    ||||||||||| ||||||||||||| | ||||| |||| |||||| |||||||||||||    
T  23280448 atgaatgagtggcaacggtggcggaaagtgctctggtgagacggtgacggtttccggta 23280390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 5671804 - 5671849
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    ||||| |||||||||||||| ||||||||||||||||| |||||||    
T  5671804 taatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaa 5671849  T

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Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 12177420 - 12177465
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    ||||| |||||||||||||| ||||||||||||||||| |||||||    
T  12177420 taatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaa 12177465  T

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Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 41 - 118
Target Start/End: Complemental strand, 14255206 - 14255129
Alignment:
Q  41 caacggtggcggataatgctccggtgtgacggtaacggtttccggtacggcatcgttgaatcttcgtggtggaacgaa 118  Q
    |||||| ||| || ||||||||||||||||||||| || ||||||  ||||  || ||| ||||||||||||||||||    
T  14255206 caacggcggcagagaatgctccggtgtgacggtaatggcttccggcgcggcggcgatgagtcttcgtggtggaacgaa 14255129  T

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Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 151
Target Start/End: Complemental strand, 4601663 - 4601553
Alignment:
Q  41 caacggtggcggataatgctccggtgtgacggtaacggtttccggtacggcatcgttgaatcttcgtggtggaacgaaatgtccttgtagacacgttagc 140  Q
    |||||||||| || ||||||| |||||||||||||  |||||||| | |||  || | | |||||| |||||||||||| ||   || || |||||||||    
T  4601663 caacggtggcagaaaatgctctggtgtgacggtaattgtttccggcatggcggcgataagtcttcgcggtggaacgaaaggtgactgcaggcacgttagc 4601564  T
Q  141 acttcgacgct 151  Q
    ||| |||||||    
T  4601563 actccgacgct 4601553  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 22414809 - 22414854
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    |||||||||||| ||| ||| ||||||||||||||||| |||||||    
T  22414809 taatgaaactgaaaaaaagtgtgtagaaagtgttgtgaaaagtgaa 22414854  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 33101564 - 33101519
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    ||||| |||||||||| ||| ||||||||||||||||| |||||||    
T  33101564 taatggaactgagaaaaagtgtgtagaaagtgttgtgaaaagtgaa 33101519  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 259
Target Start/End: Complemental strand, 4601485 - 4601417
Alignment:
Q  192 gtgaagcaagtgcacccttatataggtgcgtgttgggcata-ccgtgtccgggttatgcgacgtgtgat 259  Q
    ||||||||||| |||||||||||| | |||  |||| |||| |||| ||||||||||||| ||||||||    
T  4601485 gtgaagcaagttcacccttatatacgcgcgcattggtcatagccgtctccgggttatgcgccgtgtgat 4601417  T

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Target: scaffold0380 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: scaffold0380
Description:

Target: scaffold0380; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 51 - 119
Target Start/End: Complemental strand, 7026 - 6958
Alignment:
Q  51 ggataatgctccggtgtgacggtaacggtttccggtacggcatcgttgaatcttcgtggtggaacgaaa 119  Q
    ||||| ||||| |||||||||||||||| |||||| |||||  || ||| |||||||||||||||||||    
T  7026 ggatagtgctctggtgtgacggtaacggcttccggcacggcgccgatgagtcttcgtggtggaacgaaa 6958  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 33 - 75
Target Start/End: Original strand, 21416645 - 21416687
Alignment:
Q  33 atgagtgacaacggtggcggataatgctccggtgtgacggtaa 75  Q
    ||||||||| |||||||| ||||||||||||||||||||||||    
T  21416645 atgagtgactacggtggcagataatgctccggtgtgacggtaa 21416687  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 6928147 - 6928102
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    ||||| |||||||||||||| ||||||||||||||||| |||||||    
T  6928147 taatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaa 6928102  T

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Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 13754792 - 13754837
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    |||||||||||||||||||| ||||||||||||||||  |||||||    
T  13754792 taatgaaactgagaaagagtgtgtagaaagtgttgtgtaaagtgaa 13754837  T

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Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 13765023 - 13765068
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    |||||||||||||||||||| ||||||||||||||||  |||||||    
T  13765023 taatgaaactgagaaagagtgtgtagaaagtgttgtgtaaagtgaa 13765068  T

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Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 188
Target Start/End: Original strand, 21416772 - 21416809
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtga 188  Q
    |||||||||||||||||||| |||||||||||||||||    
T  21416772 taatgaaactgagaaagagtgtgtagaaagtgttgtga 21416809  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 24070886 - 24070931
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    ||||| |||| ||||||||| |||||||||||||||||||||||||    
T  24070886 taatggaactaagaaagagtgtgtagaaagtgttgtgagaagtgaa 24070931  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 155 - 196
Target Start/End: Original strand, 30477679 - 30477720
Alignment:
Q  155 gaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    |||||||||||||||| ||||||||||||||||| |||||||    
T  30477679 gaaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaa 30477720  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 21416831 - 21416899
Alignment:
Q  192 gtgaagcaagtgcacccttatataggtgcgtgttgggcat-accgtgtccgggttatgcgacgtgtgat 259  Q
    ||||||||||| ||||||| |||||| ||| ||||||||| ||||| ||||||||||||| | ||||||    
T  21416831 gtgaagcaagttcacccttgtataggggcgcgttgggcataaccgtctccgggttatgcggcctgtgat 21416899  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 24507373 - 24507422
Alignment:
Q  41 caacggtggcggataatgctccggtgtgacggtaacggtttccggtacggc 91  Q
    |||||||| ||||||||||||| |||||||||| ||||||| |||||||||    
T  24507373 caacggtgacggataatgctccagtgtgacggtgacggttt-cggtacggc 24507422  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 17698342 - 17698297
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    ||||| ||| |||||||||| ||||||||||||||||| |||||||    
T  17698342 taatggaaccgagaaagagtgtgtagaaagtgttgtgaaaagtgaa 17698297  T

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Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 41 - 118
Target Start/End: Original strand, 20055494 - 20055571
Alignment:
Q  41 caacggtggcggataatgctccggtgtgacggtaacggtttccggtacggcatcgttgaatcttcgtggtggaacgaa 118  Q
    |||||||||| || ||||||||| ||   | ||||||| ||||||||||||  || |||||||||| |||||||||||    
T  20055494 caacggtggcagagaatgctccgatgaatcagtaacggcttccggtacggcggcgatgaatcttcgcggtggaacgaa 20055571  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 259
Target Start/End: Complemental strand, 11776241 - 11776173
Alignment:
Q  192 gtgaagcaagtgcacccttatataggtgcgtgttgggcat-accgtgtccgggttatgcgacgtgtgat 259  Q
    ||||| ||||| |||| ||||||||||||| ||||||||| ||||| ||||| | ||||| ||||||||    
T  11776241 gtgaaacaagttcacctttatataggtgcgcgttgggcataaccgtctccggataatgcggcgtgtgat 11776173  T

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Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 151 - 195
Target Start/End: Complemental strand, 26916955 - 26916911
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtga 195  Q
    ||||| |||||||| ||||| ||||||||||||||||| ||||||    
T  26916955 taatggaactgagagagagtgtgtagaaagtgttgtgaaaagtga 26916911  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 22903127 - 22903172
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    ||||| |||||||||||||| ||||||||||||||||| |||||||    
T  22903127 taatggaactgagaaagagtgtgtagaaagtgttgtgaaaagtgaa 22903172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 196
Target Start/End: Original strand, 20025318 - 20025362
Alignment:
Q  152 aatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    ||||||||||||||||||| ||||||||||||||||  |||||||    
T  20025318 aatgaaactgagaaagagtgtgtagaaagtgttgtgtaaagtgaa 20025362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 155 - 196
Target Start/End: Complemental strand, 27083291 - 27083250
Alignment:
Q  155 gaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    ||||||| |||||||| ||||||||||||||||| |||||||    
T  27083291 gaaactgtgaaagagtgtgtagaaagtgttgtgaaaagtgaa 27083250  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 259
Target Start/End: Original strand, 22865854 - 22865922
Alignment:
Q  192 gtgaagcaagtgcacccttatataggtgcgtgttgggcat-accgtgtccgggttatgcgacgtgtgat 259  Q
    ||||||||||| |||||||||||||| | | ||||| ||| ||||| ||||| ||||||||| ||||||    
T  22865854 gtgaagcaagttcacccttatataggcgtgcgttggccataaccgtttccggattatgcgacttgtgat 22865922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 55 - 119
Target Start/End: Original strand, 25537334 - 25537398
Alignment:
Q  55 aatgctccggtgtgacggtaacggtttccggtacggcatcgttgaatcttcgtggtggaacgaaa 119  Q
    ||||||| |||||||||||||||||||| || |||||  ||  || |||||| ||||||||||||    
T  25537334 aatgctctggtgtgacggtaacggtttctggcacggcggcgaagagtcttcgcggtggaacgaaa 25537398  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 192 - 259
Target Start/End: Complemental strand, 26348089 - 26348021
Alignment:
Q  192 gtgaagcaagtgcacccttatataggtgcgtgttgggcatac-cgtgtccgggttatgcgacgtgtgat 259  Q
    ||||||||||| |||||||||||||| || ||||   ||||  ||| ||||||||||||||||||||||    
T  26348089 gtgaagcaagttcacccttatataggcgcatgttttccataaacgtctccgggttatgcgacgtgtgat 26348021  T

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Target: scaffold0505 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0505
Description:

Target: scaffold0505; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Original strand, 7919 - 7964
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    ||||| || ||||||||||| ||||||||||||||||| |||||||    
T  7919 taatgcaattgagaaagagtgtgtagaaagtgttgtgaaaagtgaa 7964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0023 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0023
Description:

Target: scaffold0023; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 151 - 196
Target Start/End: Complemental strand, 95867 - 95822
Alignment:
Q  151 taatgaaactgagaaagagtatgtagaaagtgttgtgagaagtgaa 196  Q
    ||||| ||||||||||||||  |||||||||||||||| |||||||    
T  95867 taatggaactgagaaagagtgcgtagaaagtgttgtgaaaagtgaa 95822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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