View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21568_high_9 (Length: 275)
Name: NF21568_high_9
Description: NF21568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21568_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 35370606 - 35370873
Alignment:
| Q |
1 |
acatcacactaaattcaggagaaattactcactttttatgccaatgtatgactacatttatggtacggtagataaatccacagatgttatatatgaaacc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35370606 |
acatcacactaaattcaggagaaattactcactttttatgccaatgtatgactacatttatggtacggtagataaatccacagatgttatatatgaaacc |
35370705 |
T |
|
| Q |
101 |
tcattgataagaccaaaggagtcaccagatgtggtccacttaacacatttaacaacatttaattccatctatcaattacgtttaggctttgcttcattag |
200 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35370706 |
tcattgatgagaccaaaggagtcaccagatgtggtccacttaacacatttaacaacatttaattccatctatcaattacgtttaggctttgcttcattag |
35370805 |
T |
|
| Q |
201 |
catccaaccctcaaacatctaaatggtacctacatttaatgtggccctttacaatgctccctatgctt |
268 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||| |
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| T |
35370806 |
catccaaccctcaaacatctaaatggtacctacatttaatgtggccctttacaatgttctctatgctt |
35370873 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 2 - 256
Target Start/End: Original strand, 35381174 - 35381428
Alignment:
| Q |
2 |
catcacactaaattcaggagaaattactcactttttatgccaatgtatgactacatttatggtacggtagataaatccacagatgttatatatgaaacct |
101 |
Q |
| |
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|||||||| ||||| ||| ||||||||||| || ||||| || ||||||||||||||||| || ||||||||||||||||||| || ||||||| ||| |
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| T |
35381174 |
catcacaccaaatttaggtctaattactcactcttcatgcctatatatgactacatttatggcaccgtagataaatccacagatgctacatatgaagcct |
35381273 |
T |
|
| Q |
102 |
cattgataagaccaaaggagtcaccagatgtggtccacttaacacatttaacaacatttaattccatctatcaattacgtttaggctttgcttcattagc |
201 |
Q |
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| T |
35381274 |
cattgatgagaccaaaggagtcaccagatgtggtccacttaacacatttaactacacttagttccatctatcaattacgtttaggctttacttcattagc |
35381373 |
T |
|
| Q |
202 |
atccaaccctcaaacatctaaatggtacctacatttaatgtggccctttacaatg |
256 |
Q |
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||||| |||||||||||||||||||||||| ||||||||||||||||||||||| |
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|
| T |
35381374 |
ctccaatcctcaaacatctaaatggtacctatatttaatgtggccctttacaatg |
35381428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 2 - 268
Target Start/End: Original strand, 35355160 - 35355426
Alignment:
| Q |
2 |
catcacactaaattcaggagaaattactcactttttatgccaatgtatgactacatttatggtacggtagataaatccacagatgttatatatgaaacct |
101 |
Q |
| |
|
|||||||| ||||||||| || ||||||||||| ||||||||||||||||||||||||||||| || ||||||||||||||| || ||||||||||| |
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| T |
35355160 |
catcacaccaaattcagggctaactactcacttttcatgccaatgtatgactacatttatggtacagtgcataaatccacagatgctacatatgaaacct |
35355259 |
T |
|
| Q |
102 |
cattgataagaccaaaggagtcaccagatgtggtccacttaacacatttaacaacatttaattccatctatcaattacgtttaggctttgcttcattagc |
201 |
Q |
| |
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||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| || |||| || |||||| | ||||||||||||||||| ||||| |
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| T |
35355260 |
cattgatgagaccaaaggagtcaccagatgtggtccacttaacacatttaactacacttgattcaatttatcaaatgcgtttaggctttgcttccttagc |
35355359 |
T |
|
| Q |
202 |
atccaaccctcaaacatctaaatggtacctacatttaatgtggccctttacaatgctccctatgctt |
268 |
Q |
| |
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||||| |||||||||||||||||||| ||||| ||||||||||| ||||||||| || |||||||| |
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| T |
35355360 |
ttccaatcctcaaacatctaaatggtatctacacttaatgtggccatttacaatgttctctatgctt |
35355426 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 103; Significance: 3e-51; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 2 - 256
Target Start/End: Original strand, 19685152 - 19685406
Alignment:
| Q |
2 |
catcacactaaattcaggagaaattactcactttttatgccaatgtatgactacatttatggtacggtagataaatccacagatgttatatatgaaacct |
101 |
Q |
| |
|
|||||||| ||||| ||| |||||||||||| || ||||| || |||||| ||||||||||||| || |||| |||| |||||| || ||||||| | | |
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| T |
19685152 |
catcacacaaaatttaggtcaaattactcactcttcatgcctatatatgaccacatttatggtactgtggatacatcctcagatgctacatatgaagctt |
19685251 |
T |
|
| Q |
102 |
cattgataagaccaaaggagtcaccagatgtggtccacttaacacatttaacaacatttaattccatctatcaattacgtttaggctttgcttcattagc |
201 |
Q |
| |
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| || |||| | ||||||||||||||||||| ||||||||||||||||||||| || ||||||||| |||| |||||||||| ||||||| ||||| |
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| T |
19685252 |
gttcgaagagacaagaggagtcaccagatgtggtgcacttaacacatttaacaacacttgattccatctttcaactacgtttagggcttgcttccttagc |
19685351 |
T |
|
| Q |
202 |
atccaaccctcaaacatctaaatggtacctacatttaatgtggccctttacaatg |
256 |
Q |
| |
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||||||||||||||||| |||||||| || ||||||||||||| ||||||||| |
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| T |
19685352 |
ctccaaccctcaaacatcgaaatggtatctcaatttaatgtggccttttacaatg |
19685406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 2 - 253
Target Start/End: Complemental strand, 19629499 - 19629248
Alignment:
| Q |
2 |
catcacactaaattcaggagaaattactcactttttatgccaatgtatgactacatttatggtacggtagataaatccacagatgttatatatgaaacct |
101 |
Q |
| |
|
|||||||| ||||| ||| |||||||||||| || ||||| || |||||||||||||||||||| || ||| ||||||||||| || ||||||| | | |
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| T |
19629499 |
catcacacaaaatttaggtcaaattactcactcttcatgcctatatatgactacatttatggtacagtggatgcatccacagatgctacatatgaatctt |
19629400 |
T |
|
| Q |
102 |
cattgataagaccaaaggagtcaccagatgtggtccacttaacacatttaacaacatttaattccatctatcaattacgtttaggctttgcttcattagc |
201 |
Q |
| |
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|||| |||| | |||| |||||||||||||| ||||||||||||||||||||| || |||| |||| |||| |||| ||||| |||||||| ||||| |
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| T |
19629399 |
gtttgaagagacaagaggaatcaccagatgtggtgcacttaacacatttaacaacacttgattctatctttcaactacgcttagggtttgcttccttagc |
19629300 |
T |
|
| Q |
202 |
atccaaccctcaaacatctaaatggtacctacatttaatgtggccctttaca |
253 |
Q |
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|||||||||||||| ||||||||||| || ||||||||||||| |||||| |
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| T |
19629299 |
ctccaaccctcaaacttctaaatggtatctcaatttaatgtggccttttaca |
19629248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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