View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21568_low_12 (Length: 261)
Name: NF21568_low_12
Description: NF21568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21568_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 19 - 243
Target Start/End: Original strand, 36216671 - 36216895
Alignment:
| Q |
19 |
ctgaagccaaccattcacttcattagtccttttcttcactcctgtgctctcagctctatcaatttctgtctgcacattcttttccttgttttgaagatca |
118 |
Q |
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||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
36216671 |
ctgaagccaaccaattccttcattagtccttttcttcactcctgtgctctcagctctatcaatttctgtctgcacatccttttccttgttttgaagatca |
36216770 |
T |
|
| Q |
119 |
tcccatttttctttcagtgactccagattctcctgcagcttataaacataggcagcttgtgcatttgtgcaaccgaacaaactttttgcaacttcccaaa |
218 |
Q |
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|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
36216771 |
tcccatttttctttcagtgattccagattctcctgcagcttataaacataggcagcttgtgcatttgtgcaactgaacaaactttttgcaacttcccaaa |
36216870 |
T |
|
| Q |
219 |
tcactcccaacgcttccatagtttt |
243 |
Q |
| |
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| | ||||||||||||||| ||||| |
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| T |
36216871 |
ttattcccaacgcttccatggtttt |
36216895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 19 - 237
Target Start/End: Original strand, 36234607 - 36234825
Alignment:
| Q |
19 |
ctgaagccaaccattcacttcattagtccttttcttcactcctgtgctctcagctctatcaatttctgtctgcacattcttttccttgttttgaagatca |
118 |
Q |
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||||||||||||| || |||||| ||||||||| ||||||||||||||||| || ||||||||| ||| ||||| ||||| |||||||||||||||| |
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| T |
36234607 |
ctgaagccaaccaatcccttcatatgtccttttcatcactcctgtgctctcatctttatcaatttttgttaccacatccttttgcttgttttgaagatca |
36234706 |
T |
|
| Q |
119 |
tcccatttttctttcagtgactccagattctcctgcagcttataaacataggcagcttgtgcatttgtgcaaccgaacaaactttttgcaacttcccaaa |
218 |
Q |
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|||||||||| |||| | ||||||||||| |||||||||||||||||| ||||||||||||| | ||| |||||||||||||| ||||||||||||| |
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| T |
36234707 |
tcccattttttgttcaacaattccagattctcttgcagcttataaacatagacagcttgtgcattagcgcacccgaacaaacttttcgcaacttcccaaa |
36234806 |
T |
|
| Q |
219 |
tcactcccaacgcttccat |
237 |
Q |
| |
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| ||||||||||||||||| |
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| T |
36234807 |
ttactcccaacgcttccat |
36234825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 136; Significance: 5e-71; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 34 - 237
Target Start/End: Original strand, 9770331 - 9770534
Alignment:
| Q |
34 |
cacttcattagtccttttcttcactcctgtgctctcagctctatcaatttctgtctgcacattcttttccttgttttgaagatcatcccatttttctttc |
133 |
Q |
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|||||| || ||||||||| |||||| ||||||||||||||| ||||||||||| |||| | |||||||||||||||||||||||||||| ||| ||| |
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| T |
9770331 |
cacttcctttgtccttttcatcactcttgtgctctcagctctttcaatttctgttagcacgtccttttccttgttttgaagatcatcccatattttgttc |
9770430 |
T |
|
| Q |
134 |
agtgactccagattctcctgcagcttataaacataggcagcttgtgcatttgtgcaaccgaacaaactttttgcaacttcccaaatcactcccaacgctt |
233 |
Q |
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|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||| ||||||||||||| |
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| T |
9770431 |
agtgattccagattctcctgcagcttataaacataggcagcttgtgcatttgtgcaactcaacaaacttttcgcaacttcccaaattactcccaacgctt |
9770530 |
T |
|
| Q |
234 |
ccat |
237 |
Q |
| |
|
|||| |
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|
| T |
9770531 |
ccat |
9770534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 19 - 243
Target Start/End: Complemental strand, 25467342 - 25467118
Alignment:
| Q |
19 |
ctgaagccaaccattcacttcattagtccttttcttcactcctgtgctctcagctctatcaatttctgtctgcacattcttttccttgttttgaagatca |
118 |
Q |
| |
|
||||||||||||| || ||||||| ||||||||| ||||||||||||||||| || ||||||||| ||| |||||| |||||||||||||||||||||| |
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| T |
25467342 |
ctgaagccaaccaatcccttcatttgtccttttcatcactcctgtgctctcatctttatcaatttttgttagcacatccttttccttgttttgaagatca |
25467243 |
T |
|
| Q |
119 |
tcccatttttctttcagtgactccagattctcctgcagcttataaacataggcagcttgtgcatttgtgcaaccgaacaaactttttgcaacttcccaaa |
218 |
Q |
| |
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|||||||||| |||||||| |||||||| || || | ||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
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| T |
25467242 |
tcccattttttgttcagtgattccagattttcttgtaatttataaatataggcagcttgtgcatttgtgcaactgaacaaacattttgcaacttcccaaa |
25467143 |
T |
|
| Q |
219 |
tcactcccaacgcttccatagtttt |
243 |
Q |
| |
|
| ||||||||||||||||| ||||| |
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| T |
25467142 |
ttactcccaacgcttccattgtttt |
25467118 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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