View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21568_low_13 (Length: 258)

Name: NF21568_low_13
Description: NF21568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21568_low_13
NF21568_low_13
[»] chr4 (6 HSPs)
chr4 (1-238)||(14195357-14195592)
chr4 (1-238)||(43388725-43388960)
chr4 (1-194)||(43391444-43391634)
chr4 (115-164)||(33993568-33993617)
chr4 (117-178)||(53962333-53962395)
chr4 (123-170)||(50117367-50117414)
[»] chr2 (4 HSPs)
chr2 (14-179)||(38615237-38615399)
chr2 (117-178)||(38610292-38610354)
chr2 (123-163)||(23886513-23886553)
chr2 (123-187)||(24137041-24137106)
[»] chr1 (5 HSPs)
chr1 (2-163)||(51392564-51392720)
chr1 (117-178)||(49209275-49209337)
chr1 (125-179)||(19832615-19832670)
chr1 (123-238)||(19862390-19862508)
chr1 (203-238)||(14547174-14547209)
[»] chr3 (5 HSPs)
chr3 (12-136)||(3797824-3797944)
chr3 (123-178)||(49839917-49839973)
chr3 (117-178)||(3793890-3793952)
chr3 (203-238)||(16705141-16705176)
chr3 (125-178)||(16706446-16706500)
[»] chr7 (1 HSPs)
chr7 (117-170)||(46148994-46149047)


Alignment Details
Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 14195592 - 14195357
Alignment:
Q  1 catatgatttctgggttgtaaaatgaggaaaaaacttagagagagaaagaaatagaagacaagataagcaggtgataaaggtgagagaaaatcatataga 100  Q
    ||||||||||||||||||||||||| |||| |||||||   ||||| ||||||||||||||||||||||| |||||| || |||||||||||||||||||    
T  14195592 catatgatttctgggttgtaaaatggggaagaaactta---agagagagaaatagaagacaagataagcaagtgatagagatgagagaaaatcatataga 14195496  T
Q  101 gaaaatgtgtggtctattttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagatcaatccattattttaatcttaaggt-nnnnn 199  Q
    |||| |||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||| ||||||          
T  14195495 gaaagtgtgtggtctattttgattgagtgtggagaggtgtatgtgctctcttgctgaggtggagtagatcaatccattattttaatcctaaggtagaaaa 14195396  T
Q  200 nnngcatcttttactccctcatgtcatgagggacctatt 238  Q
       ||||||||| ||||||||||||||||||||||||||    
T  14195395 aaagcatcttttgctccctcatgtcatgagggacctatt 14195357  T

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Target: chr4; HSP #2
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 238
Target Start/End: Complemental strand, 43388960 - 43388725
Alignment:
Q  1 catatgatttctgggttgtaaaatgaggaaaaaacttagagagagaaagaaatagaagacaagataagcaggtgataaaggtgagagaaaatcatataga 100  Q
    ||||||||| |||||||||||||||||||| |||||||   ||||| ||||||||||||||||||||||| |||||| ||||||||||||||||||||||    
T  43388960 catatgattgctgggttgtaaaatgaggaagaaactta---agagagagaaatagaagacaagataagcaagtgatagaggtgagagaaaatcatataga 43388864  T
Q  101 gaaaatgtgtggtctattttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagatcaatccattattttaatcttaaggt-nnnnn 199  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||| |||||||| ||||||          
T  43388863 gaaagtgtgtggtctattttgattgagtgtggagaggtgcatgtgctctcttgctgaggtggagtagatcaattcattgttttaatcctaaggtaaaaaa 43388764  T
Q  200 nnngcatcttttactccctcatgtcatgagggacctatt 238  Q
       ||||||||| ||||| ||||||||||||||||||||    
T  43388763 aaagcatcttttgctcccacatgtcatgagggacctatt 43388725  T

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Target: chr4; HSP #3
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 1 - 194
Target Start/End: Original strand, 43391444 - 43391634
Alignment:
Q  1 catatgatttctgggttgtaaaatgaggaaaaaacttagagagagaaagaaatagaagacaagataagcaggtgataaaggtgagagaaaatcatataga 100  Q
    |||||||||| |||||||||||||| | || ||||||| |||||||||    ||| | | |||||||||| |||||| ||| |||||||||||||||  |    
T  43391444 catatgatttatgggttgtaaaatgggaaagaaacttaaagagagaaa----tagcaaagaagataagcaagtgatagaggggagagaaaatcatatgca 43391539  T
Q  101 gaaaatgtgtggtctattttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagat-caatccattattttaatcttaaggt 194  Q
    ||||||||||||||||||||||||||||||||||| || |||||| ||||||| |||||||||| |||| |||||||||  ||||||| ||||||    
T  43391540 gaaaatgtgtggtctattttgattgagtgtggagaagtacatgtgttctcttgttgaggtggagcagatccaatccatttatttaatcctaaggt 43391634  T

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Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 115 - 164
Target Start/End: Complemental strand, 33993617 - 33993568
Alignment:
Q  115 tattttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggag 164  Q
    ||||| ||||||||||||||||||||||||||||||||| ||||||||||    
T  33993617 tatttggattgagtgtggagaggtgcatgtgctctcttgatgaggtggag 33993568  T

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Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 53962395 - 53962333
Alignment:
Q  117 ttttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagatc-aatccatt 178  Q
    |||||||||||||||||||||| |||||||||||||| |||| ||||| ||||| ||||||||    
T  53962395 ttttgattgagtgtggagaggtacatgtgctctcttgctgagatggagcagatctaatccatt 53962333  T

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Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 170
Target Start/End: Original strand, 50117367 - 50117414
Alignment:
Q  123 ttgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagatc 170  Q
    |||||||| |||||||||||||||||||||| |||||||||| |||||    
T  50117367 ttgagtgtagagaggtgcatgtgctctcttgatgaggtggagcagatc 50117414  T

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Target: chr2 (Bit Score: 78; Significance: 2e-36; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 14 - 179
Target Start/End: Original strand, 38615237 - 38615399
Alignment:
Q  14 ggttgtaaaatgaggaaaaaacttagagagagaaagaaatagaagacaagataagcaggtgataaaggtgagagaaaatcatatagagaaaatgtgtggt 113  Q
    |||||||||||| |||| ||||||||||||||||    |||||||| |||||| ||| |||||| |  ||||||||||||||||  | ||| ||||||||    
T  38615237 ggttgtaaaatggggaagaaacttagagagagaa----atagaagagaagatatgcaagtgatagaaatgagagaaaatcatatgtaaaaagtgtgtggt 38615332  T
Q  114 ctattttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagat-caatccatta 179  Q
    || |||||||||||| |||||||||||||||||||||||| |||||||||| |||| ||||||||||    
T  38615333 ctgttttgattgagtatggagaggtgcatgtgctctcttgctgaggtggagcagatccaatccatta 38615399  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 38610354 - 38610292
Alignment:
Q  117 ttttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagat-caatccatt 178  Q
    |||| |||||||||||||||||||||||||||||||| |||||||||| |||| |||||||||    
T  38610354 tttttattgagtgtggagaggtgcatgtgctctcttgctgaggtggagcagatccaatccatt 38610292  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 123 - 163
Target Start/End: Original strand, 23886513 - 23886553
Alignment:
Q  123 ttgagtgtggagaggtgcatgtgctctcttggtgaggtgga 163  Q
    ||||||||||||||||||||||||||||||| |||||||||    
T  23886513 ttgagtgtggagaggtgcatgtgctctcttgctgaggtgga 23886553  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 123 - 187
Target Start/End: Complemental strand, 24137106 - 24137041
Alignment:
Q  123 ttgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagat-caatccattattttaatc 187  Q
    ||||||||| ||||||| | ||||||||||| ||||||||||||||| | ||||||| ||||||||    
T  24137106 ttgagtgtgaagaggtgtaggtgctctcttgctgaggtggagtagatcctatccattgttttaatc 24137041  T

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Target: chr1 (Bit Score: 65; Significance: 1e-28; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 2 - 163
Target Start/End: Original strand, 51392564 - 51392720
Alignment:
Q  2 atatgatttctgggttgtaaaatgaggaaaaaacttagagagagaaagaaatagaagacaagataagcaggtgataaaggtgagagaaaatcatatagag 101  Q
    ||||||||| |||||||||||||| |||| |||||||   ||||| |||||||| ||| |||||||||| |||||  ||| |||||||||||||||  ||    
T  51392564 atatgatttatgggttgtaaaatggggaagaaactta---agagagagaaatagcagagaagataagcaagtgatgcaggggagagaaaatcatatgaag 51392660  T
Q  102 aaaatgtgtggtctattttgattgagtgtggagaggtgcatgtgctctcttggtgaggtgga 163  Q
    |   ||| ||||||  |||| ||||||||||||||||||||||||||||||| |||||||||    
T  51392661 ag--tgtctggtctgctttggttgagtgtggagaggtgcatgtgctctcttgctgaggtgga 51392720  T

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Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 117 - 178
Target Start/End: Original strand, 49209275 - 49209337
Alignment:
Q  117 ttttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagatc-aatccatt 178  Q
    |||||||||||||||||||||| |||||||||||||| |||||||||| ||||| ||||||||    
T  49209275 ttttgattgagtgtggagaggtacatgtgctctcttgctgaggtggagcagatctaatccatt 49209337  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 125 - 179
Target Start/End: Complemental strand, 19832670 - 19832615
Alignment:
Q  125 gagtgtggagaggtgcatgtgctctcttggtgaggtggagtagat-caatccatta 179  Q
    ||||||||||||||| | ||||||||||| ||||||||||||||| ||||||||||    
T  19832670 gagtgtggagaggtgtaggtgctctcttgctgaggtggagtagatccaatccatta 19832615  T

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Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 238
Target Start/End: Original strand, 19862390 - 19862508
Alignment:
Q  123 ttgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagat-caatccattattttaatcttaaggt--nnnnnnnngcatcttttactccctc 219  Q
    ||||||||||||||||| | ||||||||||| | ||||||||||||| |||||||||  ||| ||| ||||||          ||||||||| |||||||    
T  19862390 ttgagtgtggagaggtgtaggtgctctcttgcttaggtggagtagatccaatccattgctttgatcctaaggtaaaaaaaaaagcatcttttgctccctc 19862489  T
Q  220 atgtcatgagggacctatt 238  Q
    || ||||||||||||||||    
T  19862490 atatcatgagggacctatt 19862508  T

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Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 238
Target Start/End: Complemental strand, 14547209 - 14547174
Alignment:
Q  203 gcatcttttactccctcatgtcatgagggacctatt 238  Q
    ||||||||| ||||||||||||||||||||||||||    
T  14547209 gcatcttttgctccctcatgtcatgagggacctatt 14547174  T

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Target: chr3 (Bit Score: 52; Significance: 7e-21; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 12 - 136
Target Start/End: Original strand, 3797824 - 3797944
Alignment:
Q  12 tgggttgtaaaatgaggaaaaaacttagagagagaaagaaatagaagacaagataagcaggtgataaaggtgagagaaaatcatatagagaaaatgtgtg 111  Q
    |||||||||||||| |||| ||| ||||||||||||    |||||||| |||||| ||| |||||| ||| ||||||||| ||| |  ||||||||||||    
T  3797824 tgggttgtaaaatggggaagaaatttagagagagaa----atagaagagaagataggcaagtgatagaggggagagaaaagcatgtgcagaaaatgtgtg 3797919  T
Q  112 gtctattttgattgagtgtggagag 136  Q
    || | ||||||||||||||||||||    
T  3797920 gtttgttttgattgagtgtggagag 3797944  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 123 - 178
Target Start/End: Original strand, 49839917 - 49839973
Alignment:
Q  123 ttgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagatc-aatccatt 178  Q
    ||||||||||||||||||||||||||||||| |||||||||| ||||| ||||||||    
T  49839917 ttgagtgtggagaggtgcatgtgctctcttgatgaggtggagcagatctaatccatt 49839973  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 117 - 178
Target Start/End: Complemental strand, 3793952 - 3793890
Alignment:
Q  117 ttttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagat-caatccatt 178  Q
    ||||||||||||||||||||||||||||||||||||| ||| || || ||||| |||||||||    
T  3793952 ttttgattgagtgtggagaggtgcatgtgctctcttgctgaagttgaatagatccaatccatt 3793890  T

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Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 203 - 238
Target Start/End: Complemental strand, 16705176 - 16705141
Alignment:
Q  203 gcatcttttactccctcatgtcatgagggacctatt 238  Q
    ||||||||| ||||||||||||||||||||||||||    
T  16705176 gcatcttttgctccctcatgtcatgagggacctatt 16705141  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 125 - 178
Target Start/End: Complemental strand, 16706500 - 16706446
Alignment:
Q  125 gagtgtggagaggtgcatgtgctctcttggtgaggtggagtagat-caatccatt 178  Q
    ||||||||||||||| | ||||||||||| |||| |||||||||| |||||||||    
T  16706500 gagtgtggagaggtgtaggtgctctcttgctgagatggagtagatccaatccatt 16706446  T

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Target: chr7 (Bit Score: 42; Significance: 0.000000000000006; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 117 - 170
Target Start/End: Complemental strand, 46149047 - 46148994
Alignment:
Q  117 ttttgattgagtgtggagaggtgcatgtgctctcttggtgaggtggagtagatc 170  Q
    ||||| ||||||||||||||||||||||||||||||| |||||||||| |||||    
T  46149047 ttttggttgagtgtggagaggtgcatgtgctctcttgatgaggtggagcagatc 46148994  T

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