View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21568_low_15 (Length: 250)
Name: NF21568_low_15
Description: NF21568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21568_low_15 |
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| [»] chr4 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 18 - 250
Target Start/End: Complemental strand, 45738440 - 45738208
Alignment:
| Q |
18 |
gttaatgctgtttctttggctcgtttggttatggataatacgcctcatatttatttggcttttgatggagctgaggattttgcaagacaacaagttggtt |
117 |
Q |
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| T |
45738440 |
gttaatgctgtttctttggctcgtttggttatggacaatacgcctcatatttatttggcttttgatggagctgaggattttgcaagacaacaagttggtt |
45738341 |
T |
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| Q |
118 |
tatctcttttcttaactcattttcaagtttcagcattgaagacatgtttggattgatttattatttgagtttacttagtgacgtaatcattttagatatt |
217 |
Q |
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| T |
45738340 |
tatttcttttcttaactcattttcaagtttcagcatttaagacatgtttggattgatttattatttgagtttacttagtgacgtaatcattttagatatt |
45738241 |
T |
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| Q |
218 |
gtttgtgagaatgtttggattgatttattattt |
250 |
Q |
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| T |
45738240 |
gtttgtgagaatgtttggattgatttattattt |
45738208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 21 - 141
Target Start/End: Complemental strand, 45732967 - 45732847
Alignment:
| Q |
21 |
aatgctgtttctttggctcgtttggttatggataatacgcctcatatttatttggcttttgatggagctgaggattttgcaagacaacaagttggtttat |
120 |
Q |
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| T |
45732967 |
aatgctatttctttggctcgtttggttatggataatactcctcatatttatttagcttttgatggagctgaggattttgcaagacaacaagttggtttat |
45732868 |
T |
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| Q |
121 |
ctcttttcttaactcattttc |
141 |
Q |
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| T |
45732867 |
ttcttttccaatctcattttc |
45732847 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 161 - 222
Target Start/End: Complemental strand, 45738230 - 45738169
Alignment:
| Q |
161 |
atgtttggattgatttattatttgagtttacttagtgacgtaatcattttagatattgtttg |
222 |
Q |
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| T |
45738230 |
atgtttggattgatttattatttgagtttacttagtgtcgtaatcattttagatattgtttg |
45738169 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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