View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21568_low_17 (Length: 225)
Name: NF21568_low_17
Description: NF21568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21568_low_17 |
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Alignment Details
Target: chr5 (Bit Score: 208; Significance: 1e-114; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 208; E-Value: 1e-114
Query Start/End: Original strand, 1 - 216
Target Start/End: Original strand, 31712639 - 31712854
Alignment:
| Q |
1 |
ttctttgatatgttgatgatggccctattaacaggaaaggagagaaatgagaaggaatggatgaaattgatttctttggctggttttaatgactacaaga |
100 |
Q |
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| T |
31712639 |
ttctttgatatgttgatgatggccctattaacaggaaaagagagaaatgagaaggaatggatgaaattgatttctttggctggttttaatgactacaaga |
31712738 |
T |
|
| Q |
101 |
taacaccaattctaggcttaaggtccatgattgagatctatccataaaatataatatctatccatttatcaacaatattctttaggcctctcttccttct |
200 |
Q |
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| T |
31712739 |
taacaccaattctaggcttaaggtccatgattgagatctatccataaaatataatatctatccatttatcaacaacattctttaggcctctcttccttct |
31712838 |
T |
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| Q |
201 |
ttggccatctacattg |
216 |
Q |
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|||||||||||||||| |
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| T |
31712839 |
ttggccatctacattg |
31712854 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 145
Target Start/End: Original strand, 31684914 - 31685058
Alignment:
| Q |
1 |
ttctttgatatgttgatgatggccctattaacaggaaaggagagaaatgagaaggaatggatgaaattgatttctttggctggttttaatgactacaaga |
100 |
Q |
| |
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|||||||||||||| ||||||| |||| ||||||| |||||||| ||||| |||||||| || |||||||| | |||||||||| ||||||||||| |
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| T |
31684914 |
ttctttgatatgtttatgatggtagtatttgcaggaaaagagagaaacgagaaagaatggattaagttgatttcctctgctggttttagtgactacaaga |
31685013 |
T |
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| Q |
101 |
taacaccaattctaggcttaaggtccatgattgagatctatccat |
145 |
Q |
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| T |
31685014 |
ttactccaattttaggatcaacgtctatgattgagatctatccat |
31685058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 160
Target Start/End: Original strand, 31704229 - 31704388
Alignment:
| Q |
1 |
ttctttgatatgttgatgatggccctattaacaggaaaggagagaaatgagaaggaatggatgaaattgatttctttggctggttttaatgactacaaga |
100 |
Q |
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|||||||||||||||||||||| || | ||||||| |||||||| |||| |||||||| || |||||||| | |||||||||| |||||||||| |
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| T |
31704229 |
ttctttgatatgttgatgatggtagtacttgcaggaaaagagagaaacaagaaagaatggattaagttgatttcctctgctggttttagcgactacaaga |
31704328 |
T |
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| Q |
101 |
taacaccaattctaggcttaaggtccatgattgagatctatccataaaatataatatcta |
160 |
Q |
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| || |||||| |||| |||||||| | |||||||||||||||||| |||| ||||||| |
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| T |
31704329 |
ttactccaattttaggtttaaggtcactaattgagatctatccataacatatcatatcta |
31704388 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 122
Target Start/End: Original strand, 31735585 - 31735706
Alignment:
| Q |
1 |
ttctttgatatgttgatgatggccctattaacaggaaaggagagaaatgagaaggaatggatgaaattgatttctttggctggttttaatgactacaaga |
100 |
Q |
| |
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|||||||||||||||||||||| | | || ||||| ||||||| |||| |||||| | ||||||||||||| ||| |||||| ||||||||||| |
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| T |
31735585 |
ttctttgatatgttgatgatggtaacactcaccggaaaagagagaaccaagaaagaatgggttaaattgatttcttcggccggtttttgtgactacaaga |
31735684 |
T |
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| Q |
101 |
taacaccaattctaggcttaag |
122 |
Q |
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|||| |||||| |||| ||||| |
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| T |
31735685 |
taactccaattttagggttaag |
31735706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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