View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21568_low_2 (Length: 476)

Name: NF21568_low_2
Description: NF21568
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21568_low_2
NF21568_low_2
[»] chr4 (51 HSPs)
chr4 (169-476)||(27569362-27569669)
chr4 (1-173)||(27425810-27425982)
chr4 (1-173)||(27570019-27570191)
chr4 (1-168)||(27420406-27420573)
chr4 (29-173)||(27412690-27412834)
chr4 (1-173)||(27415622-27415791)
chr4 (8-167)||(27468303-27468462)
chr4 (45-168)||(27475554-27475677)
chr4 (45-168)||(27503964-27504087)
chr4 (8-167)||(27514896-27515055)
chr4 (45-168)||(27524566-27524689)
chr4 (1-168)||(27565926-27566093)
chr4 (1-161)||(27497304-27497464)
chr4 (1-168)||(27478858-27479025)
chr4 (5-173)||(27423224-27423392)
chr4 (1-168)||(27506696-27506863)
chr4 (1-162)||(27485924-27486085)
chr4 (8-139)||(27489965-27490096)
chr4 (1-173)||(27563316-27563488)
chr4 (8-168)||(27527166-27527322)
chr4 (47-168)||(27508896-27509017)
chr4 (266-382)||(27426412-27426527)
chr4 (264-349)||(27416294-27416379)
chr4 (277-362)||(27420821-27420906)
chr4 (11-168)||(27585696-27585853)
chr4 (1-143)||(27444794-27444936)
chr4 (268-405)||(27413281-27413417)
chr4 (45-143)||(27411456-27411554)
chr4 (1-143)||(27431148-27431290)
chr4 (5-143)||(27557491-27557629)
chr4 (45-151)||(27567297-27567403)
chr4 (45-126)||(27414321-27414402)
chr4 (2-143)||(27526112-27526253)
chr4 (2-142)||(27498414-27498554)
chr4 (28-143)||(27424514-27424629)
chr4 (2-141)||(27501316-27501455)
chr4 (169-219)||(27420931-27420981)
chr4 (45-143)||(27479943-27480041)
chr4 (26-151)||(17970322-17970447)
chr4 (38-143)||(27500338-27500443)
chr4 (2-143)||(27513776-27513917)
chr4 (65-143)||(27559240-27559318)
chr4 (38-143)||(27460513-27460618)
chr4 (26-143)||(27487006-27487123)
chr4 (45-142)||(27571665-27571762)
chr4 (38-142)||(27473927-27474031)
chr4 (26-126)||(27502824-27502924)
chr4 (95-153)||(27495628-27495686)
chr4 (45-143)||(27505702-27505800)
chr4 (45-126)||(27419088-27419169)
chr4 (2-143)||(27476686-27476827)
[»] chr5 (2 HSPs)
chr5 (9-165)||(1756735-1756891)
chr5 (1-156)||(1754686-1754841)
[»] chr3 (12 HSPs)
chr3 (1-151)||(55084784-55084934)
chr3 (1-150)||(38024868-38025017)
chr3 (1-150)||(38031320-38031469)
chr3 (28-156)||(50909985-50910113)
chr3 (34-151)||(48840704-48840820)
chr3 (26-149)||(38043926-38044049)
chr3 (47-149)||(50911863-50911965)
chr3 (50-143)||(50904792-50904885)
chr3 (47-150)||(38028759-38028862)
chr3 (47-150)||(38040074-38040177)
chr3 (26-151)||(38033767-38033896)
chr3 (48-144)||(38036792-38036888)
[»] chr8 (3 HSPs)
chr8 (5-153)||(21607286-21607434)
chr8 (47-150)||(21604747-21604850)
chr8 (68-151)||(21634608-21634691)
[»] chr2 (1 HSPs)
chr2 (26-151)||(3073592-3073717)


Alignment Details
Target: chr4 (Bit Score: 304; Significance: 1e-171; HSPs: 51)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 169 - 476
Target Start/End: Original strand, 27569362 - 27569669
Alignment:
Q  169 atctcttgtgactcttgatgaaaatctacaagacaaaaccatgtggtggttcgtcagtcgttttctctcagtaaatcccatcatttagcctacacagtaa 268  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27569362 atctcttgtgactcttgatgaaaatctacaagacaaaaccatgtggtggttcgtcagtcgttttctctcagtaaatcccatcatttagcctacacagtaa 27569461  T
Q  269 gtagtaaccattcaattctttagataaggatatcctaacaggcaccatagaatgaggaatgtgtcattaagtggaataattgactttgttactggcattg 368  Q
    |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27569462 gtagtaaccattcaattctttagataaggatatcctaacaggaaccatagaatgaggaatgtgtcattaagtggaataattgactttgttactggcattg 27569561  T
Q  369 taattgtgcacttgcctatgaggggaaggtgcctcatctataatatcatgcctaagttatgtacttcaaaaaagaatatactttagcaaatttatctttc 468  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27569562 taattgtgcacttgcctatgaggggaaggtgcctcatctataatatcatgcctaagttatgtacttcaaaaaagaatatactttagcaaatttatctttc 27569661  T
Q  469 actttcac 476  Q
    ||||||||    
T  27569662 actttcac 27569669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 149; E-Value: 2e-78
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 27425810 - 27425982
Alignment:
Q  1 tgcagtatatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagag 100  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27425810 tgcagtatatgttggagagaaacaaaagcggtatgtgatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagag 27425909  T
Q  101 tttggatatgatcatcccatgggtggcatcaccattccttgcaccgaagatatctttcaacatataacatctc 173  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||| ||| | ||||||||||| |||||||    
T  27425910 tttggatatgatcatcccatgggtggcctcaccattccttgcaccgaggatgtatttcaacatatgacatctc 27425982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 27570191 - 27570019
Alignment:
Q  1 tgcagtatatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagag 100  Q
    |||||||||||||||||||||||| | ||||||||| |||||  |||||||||| | |||||| ||||||||||||||  ||||||||  ||||||||||    
T  27570191 tgcagtatatgttggagagaaacagacgcggtatgtgatccccgtatcatacttaagccaaccttcatttcaagacttgctgagtcaagctgaggaagag 27570092  T
Q  101 tttggatatgatcatcccatgggtggcatcaccattccttgcaccgaagatatctttcaacatataacatctc 173  Q
    || |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  27570091 ttcggatatgatcatcccatgggtggcctcaccattccttgcaccgaagatatctttcaacatataacatctc 27570019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 27420406 - 27420573
Alignment:
Q  1 tgcagtatatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagag 100  Q
    |||||||||||||||||||||||| | ||||||| |||||||  |||||||||||| |||||| |||||||||| |||  |||||||| |||||||||||    
T  27420406 tgcagtatatgttggagagaaacagacgcggtatttaatccccgtatcatacttgagccaaccttcatttcaaggcttgctgagtcaagttgaggaagag 27420505  T
Q  101 tttggatatgatcatcccatgggtggcatcaccattccttgcaccgaagatatctttcaacatataac 168  Q
    ||||||||||||||||||||||||||| |||||||||||||||| |||||| ||||||||||||||||    
T  27420506 tttggatatgatcatcccatgggtggcctcaccattccttgcacggaagatgtctttcaacatataac 27420573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 29 - 173
Target Start/End: Original strand, 27412690 - 27412834
Alignment:
Q  29 cggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggca 128  Q
    |||| ||| |||||||||||||||||||||||||||| ||||||||||||||||||||||  ||| ||||||||||||||||||||||| |||||||||     
T  27412690 cggtttgtgatcccaatatcatacttgaaccaaccattatttcaagacttattgagtcaagctgaagaagagtttggatatgatcatccaatgggtggcc 27412789  T
Q  129 tcaccattccttgcaccgaagatatctttcaacatataacatctc 173  Q
    |||||||||||||||| |||||| |||||||||||||||||||||    
T  27412790 tcaccattccttgcacggaagatgtctttcaacatataacatctc 27412834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 1 - 173
Target Start/End: Original strand, 27415622 - 27415791
Alignment:
Q  1 tgcagtatatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagag 100  Q
    |||||| |||||||||   ||||||||||| | ||| ||||| ||||||||||||||||||||||| ||||||||||| |||||||||  ||||||||||    
T  27415622 tgcagtgtatgttgga---aaacaaaagcgatttgtgatccccatatcatacttgaaccaaccatcgtttcaagacttgttgagtcaagctgaggaagag 27415718  T
Q  101 tttggatatgatcatcccatgggtggcatcaccattccttgcaccgaagatatctttcaacatataacatctc 173  Q
    ||||||||||||||| ||||||||||| |||||||||||||||| |||||| |||||||||| ||||||||||    
T  27415719 tttggatatgatcattccatgggtggcctcaccattccttgcacagaagatgtctttcaacacataacatctc 27415791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 88; E-Value: 4e-42
Query Start/End: Original strand, 8 - 167
Target Start/End: Complemental strand, 27468462 - 27468303
Alignment:
Q  8 tatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggat 107  Q
    ||||||||||||||||    ||||| |||| ||||  |||||||||| |||||||| |||||||||||||| ||||||||||  |||||||| |||||||    
T  27468462 tatgttggagagaaactggtgcggtttgtagtccctgtatcatacttaaaccaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggat 27468363  T
Q  108 atgatcatcccatgggtggcatcaccattccttgcaccgaagatatctttcaacatataa 167  Q
    |||||||||||||||||||| |||||||||||||||| |||||| |||| ||||||||||    
T  27468362 atgatcatcccatgggtggcctcaccattccttgcacggaagatgtcttccaacatataa 27468303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 45 - 168
Target Start/End: Complemental strand, 27475677 - 27475554
Alignment:
Q  45 tatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcatcaccattccttgcac 144  Q
    ||||||||||||| ||||| |||||||||||||| |||||||||   |||||||||||||||||||||||||||||||||||| |||||||||||||| |    
T  27475677 tatcatacttgaatcaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatcccatgggtggcctcaccattccttgctc 27475578  T
Q  145 cgaagatatctttcaacatataac 168  Q
    ||||||| |||| |||||||||||    
T  27475577 cgaagatgtcttccaacatataac 27475554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 45 - 168
Target Start/End: Original strand, 27503964 - 27504087
Alignment:
Q  45 tatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcatcaccattccttgcac 144  Q
    ||||||||||||||||||| |||||||||||||| |||||||||   |||||||||||||||||||||||||| ||||||||| ||||||||||||||||    
T  27503964 tatcatacttgaaccaaccttcatttcaagacttgttgagtcaagccgaggaagagtttggatatgatcatccaatgggtggcctcaccattccttgcac 27504063  T
Q  145 cgaagatatctttcaacatataac 168  Q
    ||||||| |||| ||||| |||||    
T  27504064 cgaagatgtcttccaacacataac 27504087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 8 - 167
Target Start/End: Original strand, 27514896 - 27515055
Alignment:
Q  8 tatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggat 107  Q
    ||||||||||||||||    ||||| |||| ||||  ||||||||||||| ||||| |||||||||||||| ||||||||||  |||||||| |||||||    
T  27514896 tatgttggagagaaactggtgcggtttgtagtccctgtatcatacttgaatcaaccttcatttcaagacttgttgagtcaatccgaggaagaatttggat 27514995  T
Q  108 atgatcatcccatgggtggcatcaccattccttgcaccgaagatatctttcaacatataa 167  Q
    |||||||||||||||||||| ||||||||||||| || |||||| |||| || |||||||    
T  27514996 atgatcatcccatgggtggcctcaccattccttgtacagaagatgtcttccagcatataa 27515055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 45 - 168
Target Start/End: Original strand, 27524566 - 27524689
Alignment:
Q  45 tatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcatcaccattccttgcac 144  Q
    ||||||| ||||||||||| |||||||||||||| |||| ||||  ||||||||||||||||||||||||||| ||||||||| |||||||||| |||||    
T  27524566 tatcatatttgaaccaaccttcatttcaagacttgttgaatcaagctgaggaagagtttggatatgatcatccaatgggtggcctcaccattccgtgcac 27524665  T
Q  145 cgaagatatctttcaacatataac 168  Q
    ||||||| |||| |||||||||||    
T  27524666 cgaagatgtcttccaacatataac 27524689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 27566093 - 27565926
Alignment:
Q  1 tgcagtatatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagag 100  Q
    |||||| ||||||||||||||||||||||| | ||| ||||| ||||||||| ||||||||||||  |||||||||||  |||  ||| |||||||||||    
T  27566093 tgcagtgtatgttggagagaaacaaaagcgatttgtgatccccatatcatacctgaaccaaccattgtttcaagacttgctgatacaagttgaggaagag 27565994  T
Q  101 tttggatatgatcatcccatgggtggcatcaccattccttgcaccgaagatatctttcaacatataac 168  Q
      ||||||||||||||| ||||||||| |||||||||||||   ||||||| |||| |||||||||||    
T  27565993 catggatatgatcatccaatgggtggcctcaccattccttgtggcgaagatgtcttccaacatataac 27565926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 1 - 161
Target Start/End: Complemental strand, 27497464 - 27497304
Alignment:
Q  1 tgcagtatatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagag 100  Q
    |||||| ||||||||||| ||||||||||||| ||| ||||| || |||||||| ||||||||||  |||||| | || |||||||||  ||||||||||    
T  27497464 tgcagtgtatgttggagataaacaaaagcggtttgtgatccctatctcatacttaaaccaaccattgtttcaatatttgttgagtcaagctgaggaagag 27497365  T
Q  101 tttggatatgatcatcccatgggtggcatcaccattccttgcaccgaagatatctttcaac 161  Q
    |||||||||||||||||||  |||||| |||||||||||||||| ||| || |||| ||||    
T  27497364 tttggatatgatcatcccacaggtggcctcaccattccttgcactgaaaatgtcttccaac 27497304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 76; E-Value: 6e-35
Query Start/End: Original strand, 1 - 168
Target Start/End: Complemental strand, 27479025 - 27478858
Alignment:
Q  1 tgcagtatatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagag 100  Q
    |||||| ||||||||||||||||| ||||||| |||  |||||||||||||||||||||||||||  |||||||| ||  |   ||||   || |||||     
T  27479025 tgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgctacatcaagcggaagaagaa 27478926  T
Q  101 tttggatatgatcatcccatgggtggcatcaccattccttgcaccgaagatatctttcaacatataac 168  Q
    ||||||||||||||||||||||||||| |||||||||||||| |||||||| | || |||||||||||    
T  27478925 tttggatatgatcatcccatgggtggcctcaccattccttgctccgaagatgtgttccaacatataac 27478858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 73; E-Value: 4e-33
Query Start/End: Original strand, 5 - 173
Target Start/End: Original strand, 27423224 - 27423392
Alignment:
Q  5 gtatatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttg 104  Q
    |||||||||||| ||||||| |  ||| |||| ||||  |||||||||||||||||||| ||||||||||| || |||||||||   |||||||||||||    
T  27423224 gtatatgttggatagaaacagacacggcatgtgatccgcatatcatacttgaaccaaccttcatttcaagaattgttgagtcaagccgaggaagagtttg 27423323  T
Q  105 gatatgatcatcccatgggtggcatcaccattccttgcaccgaagatatctttcaacatataacatctc 173  Q
    | ||  ||||||||||||||||| ||||| |||||||||| |||||| | || ||||||||||| ||||    
T  27423324 gttacaatcatcccatgggtggcctcaccgttccttgcacggaagatgttttccaacatataacttctc 27423392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 1 - 168
Target Start/End: Original strand, 27506696 - 27506863
Alignment:
Q  1 tgcagtatatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagag 100  Q
    |||||||||||| ||||||||||| | ||||| ||| ||||||||||||||||| ||||||||||  |||||||| ||  |   ||||   || |||||     
T  27506696 tgcagtatatgtcggagagaaacagacgcggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagaattgctacatcaagcggaagaagaa 27506795  T
Q  101 tttggatatgatcatcccatgggtggcatcaccattccttgcaccgaagatatctttcaacatataac 168  Q
    ||||||||||||||||||||||||||  |||||||||||||||| |||||| |||||||||| |||||    
T  27506796 tttggatatgatcatcccatgggtggactcaccattccttgcactgaagatgtctttcaacacataac 27506863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 27486085 - 27485924
Alignment:
Q  1 tgcagtatatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagag 100  Q
    |||||| ||||||||||||||||| ||||||| |||  |||||||||||||||||||||||||||  |||||||| ||  |   ||||   || |||||     
T  27486085 tgcagtgtatgttggagagaaacagaagcggtttgttgtcccaatatcatacttgaaccaaccattgtttcaagaattgctacatcaagcggaagaagaa 27485986  T
Q  101 tttggatatgatcatcccatgggtggcatcaccattccttgcaccgaagatatctttcaaca 162  Q
    ||||||||||||||||||||||||||| |||||||||||||||| ||||   ||||||||||    
T  27485985 tttggatatgatcatcccatgggtggcctcaccattccttgcactgaaggcgtctttcaaca 27485924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 8 - 139
Target Start/End: Original strand, 27489965 - 27490096
Alignment:
Q  8 tatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggat 107  Q
    |||||||||||||||||||| |||| |||| ||||  | |||||||| ||| |||||||||||||||| || |||| ||||   ||||||||||||||||    
T  27489965 tatgttggagagaaacaaaaacggtttgtagtccctgtgtcatacttaaacaaaccatcatttcaagatttgttgaatcaagccgaggaagagtttggat 27490064  T
Q  108 atgatcatcccatgggtggcatcaccattcct 139  Q
    |||||||||| ||||||||| |||||||||||    
T  27490065 atgatcatccaatgggtggcctcaccattcct 27490096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 1 - 173
Target Start/End: Complemental strand, 27563488 - 27563316
Alignment:
Q  1 tgcagtatatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagag 100  Q
    |||||| || |||||||| ||||||||| |   ||| |||||  ||||||||||||||||| |||  |||||||| ||  ||||||||   || ||||||    
T  27563488 tgcagtgtacgttggagataaacaaaagagaattgtgatccccgtatcatacttgaaccaaacattgtttcaagatttgctgagtcaagccgaagaagag 27563389  T
Q  101 tttggatatgatcatcccatgggtggcatcaccattccttgcaccgaagatatctttcaacatataacatctc 173  Q
    ||||||||||||||||| ||||||||| |||| ||||||||||| ||||||  ||||||||||||||| ||||    
T  27563388 tttggatatgatcatccaatgggtggcctcacaattccttgcactgaagatgcctttcaacatataacttctc 27563316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 64; E-Value: 9e-28
Query Start/End: Original strand, 8 - 168
Target Start/End: Original strand, 27527166 - 27527322
Alignment:
Q  8 tatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggat 107  Q
    ||||||||||| ||||| || |||| ||| |||||||||||| |||| ||||||||||| |||| ||| ||  ||||||||  |||||||||||||||||    
T  27527166 tatgttggagataaacagaaacggtttgtgatcccaatatcacacttaaaccaaccatcgtttctagagttgctgagtcaagctgaggaagagtttggat 27527265  T
Q  108 atgatcatcccatgggtggcatcaccattccttgcaccgaagatatctttcaacatataac 168  Q
    ||||||||||||||||    ||| | ||||||||||  |||||| |||| |||||||||||    
T  27527266 atgatcatcccatggg----atcccaattccttgcagtgaagatgtcttccaacatataac 27527322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 47 - 168
Target Start/End: Original strand, 27508896 - 27509017
Alignment:
Q  47 tcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcatcaccattccttgcaccg 146  Q
    ||||| ||||||||||| |||||||||||||| |||| |||   ||||||||||||||||||||||||||| | ||||||| |||||||||| ||| |||    
T  27508896 tcatatttgaaccaaccttcatttcaagacttgttgaatcaggctgaggaagagtttggatatgatcatccaacgggtggcctcaccattccatgctccg 27508995  T
Q  147 aagatatctttcaacatataac 168  Q
    ||||| | || |||||||||||    
T  27508996 aagatgtgttccaacatataac 27509017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 266 - 382
Target Start/End: Complemental strand, 27426527 - 27426412
Alignment:
Q  266 taagtagtaaccattcaattctttagataaggatatcctaacaggcaccatagaatgaggaatgtgtcattaagtggaataattgactttgttactggca 365  Q
    |||||| ||||||||||| |||||| ||||||||||||||||||| ||||| ||||||||  ||||||||| |||| |||||||||| |||||||| | |    
T  27426527 taagtactaaccattcaactctttaaataaggatatcctaacagggaccatggaatgaggcctgtgtcattcagtgaaataattgaccttgttact-gaa 27426429  T
Q  366 ttgtaattgtgcacttg 382  Q
    |||| ||||||||||||    
T  27426428 ttgttattgtgcacttg 27426412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 264 - 349
Target Start/End: Complemental strand, 27416379 - 27416294
Alignment:
Q  264 agtaagtagtaaccattcaattctttagataaggatatcctaacaggcaccatagaatgaggaatgtgtcattaagtggaataatt 349  Q
    |||||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||  | ||||||| |||| |||||||    
T  27416379 agtaagtactaaccattcaattctttagataaggatatcctaacaggaaccatataatgaggcctatgtcattcagtgaaataatt 27416294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 277 - 362
Target Start/End: Complemental strand, 27420906 - 27420821
Alignment:
Q  277 cattcaattctttagataaggatatcctaacaggcaccatagaatgaggaatgtgtcattaagtggaataattgactttgttactg 362  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  |  | ||||||| |||| || |||||||||||||||||    
T  27420906 cattcaattctttagataaggatatcctaacaggcaccatagaatgcagcctatgtcattcagtgaaacaattgactttgttactg 27420821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 11 - 168
Target Start/End: Original strand, 27585696 - 27585853
Alignment:
Q  11 gttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatg 110  Q
    ||||| || ||||||||| | | ||| |||||  |||||||||||||||||||||  |||||||| ||  ||||||||   || ||||||||||||||||    
T  27585696 gttggtgataaacaaaagagatttgtgatccccgtatcatacttgaaccaaccattgtttcaagatttgatgagtcaagccgaagaagagtttggatatg 27585795  T
Q  111 atcatcccatgggtggcatcaccattccttgcaccgaagatatctttcaacatataac 168  Q
    ||||||| ||||| ||  |||||||||||||||| ||||||  |||  ||||||||||    
T  27585796 atcatccaatgggaggtctcaccattccttgcacagaagatgccttcaaacatataac 27585853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 27444936 - 27444794
Alignment:
Q  1 tgcagtatatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagag 100  Q
    ||||||||| ||||||||| ||   ||| ||| ||| ||||||||||||||||||| |||| ||||||||||||| ||||||| ||||   |||||| |     
T  27444936 tgcagtatacgttggagaggaaatgaagaggtttgtgatcccaatatcatacttgagccaatcatcatttcaagaattattgaatcaagccgaggaacaa 27444837  T
Q  101 tttggatatgatcatcccatgggtggcatcaccattccttgca 143  Q
    || |||||||| ||||| ||||||||  |||| ||||||||||    
T  27444836 ttcggatatgaccatccaatgggtggtctcacaattccttgca 27444794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 268 - 405
Target Start/End: Complemental strand, 27413417 - 27413281
Alignment:
Q  268 agtagtaaccattcaattctttagataaggatatcctaacaggcaccatagaatgaggaatgtgtcattaagtggaataattgactttgttactggcatt 367  Q
    |||| |||||||||||||||| ||||||||||||||||||||| ||||||||||||||   ||   ||| ||  ||||||||||| ||||||||| ||||    
T  27413417 agtaataaccattcaattcttaagataaggatatcctaacaggaaccatagaatgaggcccgttatatt-agcagaataattgaccttgttactgtcatt 27413319  T
Q  368 gtaattgtgcacttgcctatgaggggaaggtgcctcat 405  Q
    ||  |||| ||||||| |||||  ||||| ||||||||    
T  27413318 gttcttgttcacttgcttatgaaaggaagctgcctcat 27413281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 27411554 - 27411456
Alignment:
Q  45 tatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcatcaccattccttgca 143  Q
    |||||||||||||||||||||| |||||||| ||| | | ||||   || ||||| ||||||||||||||||| ||||||||  |||| ||||||||||    
T  27411554 tatcatacttgaaccaaccatcgtttcaagaattactaaatcaagcagaagaagaatttggatatgatcatcctatgggtggtctcacaattccttgca 27411456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 143
Target Start/End: Complemental strand, 27431290 - 27431148
Alignment:
Q  1 tgcagtatatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagag 100  Q
    ||||||||||||||| ||  ||   ||| ||| ||| |||||||||||||||||||||||||| ||||||||||| || |||| ||||   |||||| |     
T  27431290 tgcagtatatgttggggatgaaatgaagaggtttgtgatcccaatatcatacttgaaccaaccgtcatttcaagaattgttgaatcaagccgaggaacaa 27431191  T
Q  101 tttggatatgatcatcccatgggtggcatcaccattccttgca 143  Q
    ||||||||||| ||||| |  |||||  |||| ||||||||||    
T  27431190 tttggatatgaccatccaaccggtggtctcacaattccttgca 27431148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 143
Target Start/End: Original strand, 27557491 - 27557629
Alignment:
Q  5 gtatatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttg 104  Q
    ||||||||||||||| ||   ||| ||| ||| |||||||| |||||||| |||||||||||||||||||| ||  ||| ||||  ||||||| | ||||    
T  27557491 gtatatgttggagaggaaatgaagaggtttgtgatcccaatgtcatacttaaaccaaccatcatttcaagaattgctgaatcaagctgaggaacaatttg 27557590  T
Q  105 gatatgatcatcccatgggtggcatcaccattccttgca 143  Q
     ||||| |||||| ||||||||  |||| ||||| ||||    
T  27557591 aatatgttcatccaatgggtggtctcactattccatgca 27557629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 45 - 151
Target Start/End: Original strand, 27567297 - 27567403
Alignment:
Q  45 tatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcatcaccattccttgcac 144  Q
    |||||||||||||||||||||| |||||||| ||| | | ||||   || ||||| ||||| ||||||||||| ||||||||  |||| ||||||||||     
T  27567297 tatcatacttgaaccaaccatcgtttcaagaattactaaatcaaacagaagaagaatttggttatgatcatccaatgggtggtctcacaattccttgcag 27567396  T
Q  145 cgaagat 151  Q
    |||||||    
T  27567397 cgaagat 27567403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 27414402 - 27414321
Alignment:
Q  45 tatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtgg 126  Q
    ||||||||||||||||||| ||||||||||| ||| | | |||||  || ||||| ||||||||||||||||| ||||||||    
T  27414402 tatcatacttgaaccaaccctcatttcaagaattactaaatcaatcagaagaagaatttggatatgatcatccaatgggtgg 27414321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 27526253 - 27526112
Alignment:
Q  2 gcagtatatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagt 101  Q
    ||||| |||||||||||||||   ||||||| ||| || ||  ||||||||||||||||| | ||||| ||||| || ||||| |||  ||||||| | |    
T  27526253 gcagtgtatgttggagagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaattgttgagccaagctgaggaacaat 27526154  T
Q  102 ttggatatgatcatcccatgggtggcatcaccattccttgca 143  Q
    ||| |||||||||||| | ||||||  |||| ||||||||||    
T  27526153 ttgaatatgatcatccaacgggtggtctcactattccttgca 27526112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 2 - 142
Target Start/End: Original strand, 27498414 - 27498554
Alignment:
Q  2 gcagtatatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagt 101  Q
    |||||||||||||||||| ||   || || | ||| ||||| ||||||||||||||||||||||| || |||||||| ||||  |||   |||||| | |    
T  27498414 gcagtatatgttggagaggaaatgaaacgttttgtgatccctatatcatacttgaaccaaccatcgttccaagacttgttgaaccaagccgaggaacaat 27498513  T
Q  102 ttggatatgatcatcccatgggtggcatcaccattccttgc 142  Q
    | | |||||||||||| ||||||||  |||| |||||||||    
T  27498514 tcgaatatgatcatccaatgggtggtctcactattccttgc 27498554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 28 - 143
Target Start/End: Complemental strand, 27424629 - 27424514
Alignment:
Q  28 gcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggc 127  Q
    ||||| ||| || ||| ||||||||||||||||||| ||||||||||| ||  | | ||||| ||| ||||| | ||||||||||||||| ||||||||     
T  27424629 gcggtttgtgattccagtatcatacttgaaccaaccttcatttcaagaattgctaaatcaatctgaagaagaatatggatatgatcatccaatgggtggt 27424530  T
Q  128 atcaccattccttgca 143  Q
     | |||||||| ||||    
T  27424529 cttaccattccgtgca 27424514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 2 - 141
Target Start/End: Original strand, 27501316 - 27501455
Alignment:
Q  2 gcagtatatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagt 101  Q
    |||||||||||||||||| ||   || |||| ||| ||||||||||||||||| ||||||||||  ||||||||||| ||||  |||   |||||| | |    
T  27501316 gcagtatatgttggagaggaaatgaaacggtttgtgatcccaatatcatacttaaaccaaccattgtttcaagacttgttgaaccaagccgaggaacaat 27501415  T
Q  102 ttggatatgatcatcccatgggtggcatcaccattccttg 141  Q
    ||| ||| |||||||| | ||||||  |||| ||||||||    
T  27501416 ttgaatacgatcatccaacgggtggtctcactattccttg 27501455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 169 - 219
Target Start/End: Complemental strand, 27420981 - 27420931
Alignment:
Q  169 atctcttgtgactcttgatgaaaatctacaagacaaaaccatgtggtggtt 219  Q
    |||||||||| ||||||||||||||||| ||||||| ||||||||||||||    
T  27420981 atctcttgtgtctcttgatgaaaatctataagacaacaccatgtggtggtt 27420931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 45 - 143
Target Start/End: Original strand, 27479943 - 27480041
Alignment:
Q  45 tatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcatcaccattccttgca 143  Q
    ||||||||||||||||| ||||||| ||| | || ||||  |||  ||||||| | |||| |||||||||||| ||||||||  |||||||||||||||    
T  27479943 tatcatacttgaaccaaacatcattccaaaagttgttgaaccaagctgaggaacaatttgaatatgatcatccaatgggtggtctcaccattccttgca 27480041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 151
Target Start/End: Original strand, 17970322 - 17970447
Alignment:
Q  26 aagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtg 125  Q
    ||||||| ||| ||||| |  ||||||||||||||| | ||||||||| ||||  ||||||     |||||||| || ||||| |||||||| |||||||    
T  17970322 aagcggtttgtgatccctacgtcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacgatcatccaatgggtg 17970421  T
Q  126 gcatcaccattccttgcaccgaagat 151  Q
    || |||| ||||||||||| ||||||    
T  17970422 gcctcacaattccttgcacagaagat 17970447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 38 - 143
Target Start/End: Complemental strand, 27500443 - 27500338
Alignment:
Q  38 atcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcatcaccattc 137  Q
    ||||| ||||||||||| ||||||   ||||| ||||| ||  |||| |||| ||| ||| |||| |||||||| ||||| |||||||||||||| ||||    
T  27500443 atccctatatcatacttaaaccaaagttcattccaagaattgctgagccaatctgaagaacagttcggatatgaccatccaatgggtggcatcactattc 27500344  T
Q  138 cttgca 143  Q
    ||||||    
T  27500343 cttgca 27500338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 143
Target Start/End: Complemental strand, 27513917 - 27513776
Alignment:
Q  2 gcagtatatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagt 101  Q
    ||||| ||||| |||||||||   ||||||| ||| |||||||||||||||||||||||| | || || ||||| || ||||  |||  ||| ||| | |    
T  27513917 gcagtgtatgtaggagagaaaatgaagcggtttgtgatcccaatatcatacttgaaccaaacctcgttccaagaattgttgaaccaagctgaagaacaat 27513818  T
Q  102 ttggatatgatcatcccatgggtggcatcaccattccttgca 143  Q
     || |||||||||||| ||||||||  |||| ||||||||||    
T  27513817 atgaatatgatcatccaatgggtggtctcactattccttgca 27513776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 65 - 143
Target Start/End: Complemental strand, 27559318 - 27559240
Alignment:
Q  65 tcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcatcaccattccttgca 143  Q
    ||||||||| | ||||| || ||||  || ||||||||||||||||||||||| ||||||||  |||| ||||||||||    
T  27559318 tcatttcaatagttattaagccaatcagaagaagagtttggatatgatcatccaatgggtggtctcacaattccttgca 27559240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 38 - 143
Target Start/End: Original strand, 27460513 - 27460618
Alignment:
Q  38 atcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcatcaccattc 137  Q
    ||||| |||||||| ||||| |||  |||||| ||||| ||  |||| |||  ||||||| | |||| |||||||||||| ||||||||  |||||||||    
T  27460513 atccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaacaatttgaatatgatcatccaatgggtggtctcaccattc 27460612  T
Q  138 cttgca 143  Q
    ||||||    
T  27460613 cttgca 27460618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 26 - 143
Target Start/End: Original strand, 27487006 - 27487123
Alignment:
Q  26 aagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtg 125  Q
    ||||||| ||| |||||  |||||||||| ||||||||||| |||||||| || ||||  |||  ||| ||| | |||| |||||||||||| |||||||    
T  27487006 aagcggtttgtgatccctttatcatacttaaaccaaccatcgtttcaagaattgttgaaccaagctgaagaacaatttgaatatgatcatccaatgggtg 27487105  T
Q  126 gcatcaccattccttgca 143  Q
    |  | || ||||||||||    
T  27487106 gtcttactattccttgca 27487123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 45 - 142
Target Start/End: Original strand, 27571665 - 27571762
Alignment:
Q  45 tatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcatcaccattccttgc 142  Q
    ||||||| |||| ||| ||||| |||||||| ||| | | |||||  || ||||| ||||||||||||||||| ||||||||  |||| |||||||||    
T  27571665 tatcatatttgagccagccatcgtttcaagaattactaaatcaatcagaagaagaatttggatatgatcatccaatgggtggtctcacaattccttgc 27571762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 38 - 142
Target Start/End: Original strand, 27473927 - 27474031
Alignment:
Q  38 atcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcatcaccattc 137  Q
    ||||| |||||||| ||||| |||  |||||| ||||| ||  |||| |||  ||||||| | |||| |||||||||||| ||||||||  |||||||||    
T  27473927 atccctatatcatatttgaagcaaaaatcattccaagaattgctgagccaaagtgaggaacaatttgaatatgatcatccaatgggtggtctcaccattc 27474026  T
Q  138 cttgc 142  Q
    |||||    
T  27474027 cttgc 27474031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 26 - 126
Target Start/End: Complemental strand, 27502924 - 27502824
Alignment:
Q  26 aagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtg 125  Q
    ||||||| ||| || ||||| ||||| ||||| ||| | ||||||||||||||  |||| |||  || |||||| ||||||||||| ||||| |||||||    
T  27502924 aagcggtttgtgattccaatgtcatatttgaatcaaacttcatttcaagacttgctgagccaagctgtggaagaatttggatatgaccatccaatgggtg 27502825  T
Q  126 g 126  Q
    |    
T  27502824 g 27502824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 95 - 153
Target Start/End: Original strand, 27495628 - 27495686
Alignment:
Q  95 gaagagtttggatatgatcatcccatgggtggcatcaccattccttgcaccgaagatat 153  Q
    ||||||||||||| | ||||||| ||||||||  |||||||||||||||  ||||||||    
T  27495628 gaagagtttggatttaatcatccaatgggtggtctcaccattccttgcagagaagatat 27495686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 45 - 143
Target Start/End: Complemental strand, 27505800 - 27505702
Alignment:
Q  45 tatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcatcaccattccttgca 143  Q
    ||||||||||||||||| | ||||| ||||| || ||||  |||  ||||||| | |||| |||||| ||||| ||||||||  |||| ||||||||||    
T  27505800 tatcatacttgaaccaaacctcattccaagaattgttgaaccaagctgaggaacaatttgaatatgaccatccaatgggtggtctcactattccttgca 27505702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 45 - 126
Target Start/End: Complemental strand, 27419169 - 27419088
Alignment:
Q  45 tatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtgg 126  Q
    ||||||| |||| ||| ||||| |||||||| ||| | | |||||  || ||||| ||||||||||||||||| ||||||||    
T  27419169 tatcatatttgagccagccatcgtttcaagaattactaaatcaatcagaagaagaatttggatatgatcatccaatgggtgg 27419088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 143
Target Start/End: Original strand, 27476686 - 27476827
Alignment:
Q  2 gcagtatatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagt 101  Q
    ||||| |||||||| ||||||   ||||||| ||| || ||  ||||||||||||||||| | ||||| |||||  |  |||| |||  ||||||| | |    
T  27476686 gcagtgtatgttggtgagaaaatgaagcggtttgtgattcctgtatcatacttgaaccaaacctcattccaagaactgctgagccaaagtgaggaacaat 27476785  T
Q  102 ttggatatgatcatcccatgggtggcatcaccattccttgca 143  Q
    ||| |||||||||||| ||||||||  | || ||||||||||    
T  27476786 ttgaatatgatcatccaatgggtggtctaactattccttgca 27476827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 97; Significance: 2e-47; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 9 - 165
Target Start/End: Complemental strand, 1756891 - 1756735
Alignment:
Q  9 atgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggata 108  Q
    |||||||||||||||| ||||||| ||| ||||||||||||||||||||||||||||| |||||| |||| |||||||||  ||| ||||| ||||||||    
T  1756891 atgttggagagaaacagaagcggtttgtgatcccaatatcatacttgaaccaaccatcgtttcaatacttgttgagtcaagctgaagaagaatttggata 1756792  T
Q  109 tgatcatcccatgggtggcatcaccattccttgcaccgaagatatctttcaacatat 165  Q
    |||||| |||||||||||| |||||||||||||||||||||||  ||| ||||||||    
T  1756791 tgatcaccccatgggtggcctcaccattccttgcaccgaagatgccttccaacatat 1756735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 1 - 156
Target Start/End: Original strand, 1754686 - 1754841
Alignment:
Q  1 tgcagtatatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagag 100  Q
    |||||| ||| ||||||||||||| || ||| |||| |||||||||||||||||||| |||||||| ||||||  ||| |||||||||  || |||||||    
T  1754686 tgcagtgtatattggagagaaacagaaacggcatgtgatcccaatatcatacttgaatcaaccatcgtttcaatccttgttgagtcaagctgcggaagag 1754785  T
Q  101 tttggatatgatcatcccatgggtggcatcaccattccttgcaccgaagatatctt 156  Q
    ||||||||||||||||| ||||||||| ||||||||| |||||| |||||| ||||    
T  1754786 tttggatatgatcatccaatgggtggcctcaccattctttgcacagaagatgtctt 1754841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 67; Significance: 1e-29; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 1 - 151
Target Start/End: Original strand, 55084784 - 55084934
Alignment:
Q  1 tgcagtatatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagag 100  Q
    |||||| |||||||||||||||   ||||||| ||| ||||| || || ||||||||||||||||||||||||||||| |||||||     ||||||||     
T  55084784 tgcagtgtatgttggagagaaaatgaagcggtttgtgatccctatgtcttacttgaaccaaccatcatttcaagacttgttgagtcgggcggaggaagaa 55084883  T
Q  101 tttggatatgatcatcccatgggtggcatcaccattccttgcaccgaagat 151  Q
    |||||||| |||||||| ||||||||| |||| ||||||||||| ||||||    
T  55084884 tttggatacgatcatccaatgggtggcctcacaattccttgcacagaagat 55084934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 38025017 - 38024868
Alignment:
Q  1 tgcagtatatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagag 100  Q
    ||||||||||||||||||| ||   ||||||| ||| ||||| || ||||||||||||||| | || |||||| ||||||||||||||   ||||||||     
T  38025017 tgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtcaagcagaggaagaa 38024918  T
Q  101 tttggatatgatcatcccatgggtggcatcaccattccttgcaccgaaga 150  Q
    |||||||||||||| || ||||||||| |||| ||||||||||| |||||    
T  38024917 tttggatatgatcacccaatgggtggcctcacgattccttgcacagaaga 38024868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 1 - 150
Target Start/End: Complemental strand, 38031469 - 38031320
Alignment:
Q  1 tgcagtatatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagag 100  Q
    ||||||||||||||||||| ||   ||||||| ||| ||||| || ||||||||||||||| | || |||||| ||||||||||||||   ||||||||     
T  38031469 tgcagtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccaagcttcctttcaaaacttattgagtcaagcagaggaagaa 38031370  T
Q  101 tttggatatgatcatcccatgggtggcatcaccattccttgcaccgaaga 150  Q
    |||||||||||||| || ||||||||| |||| ||||||||||| |||||    
T  38031369 tttggatatgatcacccaatgggtggcctcacgattccttgcacagaaga 38031320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 28 - 156
Target Start/End: Original strand, 50909985 - 50910113
Alignment:
Q  28 gcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggc 127  Q
    ||||| ||| ||||| || ||||||||||||||| | ||||||||| |||| |||| |||| | |||||||| ||||||||||||||||| |||||||||    
T  50909985 gcggtttgttatccccatgtcatacttgaaccaagcttcatttcaaaacttgttgaatcaagtggaggaagaatttggatatgatcatccaatgggtggc 50910084  T
Q  128 atcaccattccttgcaccgaagatatctt 156  Q
     |||| ||||||||||| |||||| ||||    
T  50910085 ctcacaattccttgcacagaagatgtctt 50910113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 34 - 151
Target Start/End: Complemental strand, 48840820 - 48840704
Alignment:
Q  34 tgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcatcacc 133  Q
    ||||||||| ||  |||||||||||||| | |||||||||||||| |||||| || | ||| |||| ||||||||||||||||| ||||||||| ||||     
T  48840820 tgtaatccccatgccatacttgaaccaagcctcatttcaagacttgttgagt-aagtggagaaagaatttggatatgatcatccaatgggtggcctcaca 48840722  T
Q  134 attccttgcaccgaagat 151  Q
    ||||||||||| ||||||    
T  48840721 attccttgcacagaagat 48840704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 26 - 149
Target Start/End: Original strand, 38043926 - 38044049
Alignment:
Q  26 aagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtg 125  Q
    ||||||| ||| ||||| || ||||||||||| ||| | || |||||||||||  ||||||||   |||||||| ||||||||||||||||| ||||| |    
T  38043926 aagcggtttgtgatccctatgtcatacttgaatcaaacttcgtttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatccaatgggcg 38044025  T
Q  126 gcatcaccattccttgcaccgaag 149  Q
    || |||| ||||||||||||||||    
T  38044026 gcctcacaattccttgcaccgaag 38044049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 47 - 149
Target Start/End: Complemental strand, 50911965 - 50911863
Alignment:
Q  47 tcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcatcaccattccttgcaccg 146  Q
    ||||||||||||||| | ||||||||| |||| |||||||||   |||||||| |||||||||||||| || ||||||||| | || ||||||||||| |    
T  50911965 tcatacttgaaccaagcttcatttcaaaacttgttgagtcaagcagaggaagaatttggatatgatcacccaatgggtggcctaacaattccttgcacag 50911866  T
Q  147 aag 149  Q
    |||    
T  50911865 aag 50911863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 50 - 143
Target Start/End: Complemental strand, 50904885 - 50904792
Alignment:
Q  50 tacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcatcaccattccttgca 143  Q
    |||||||||||| | |||||||||||||| ||||||| |   ||||| || || |||||||||||||| ||||||||| |||||||||||||||    
T  50904885 tacttgaaccaaacttcatttcaagacttgttgagtcgagcagaggatgaattcggatatgatcatccaatgggtggcctcaccattccttgca 50904792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 38028862 - 38028759
Alignment:
Q  47 tcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcatcaccattccttgcaccg 146  Q
    ||||||||||||||| | ||||||||| || | |||||||||   |||||||| ||||||||||| ||||| ||||| ||| |||| ||||||||||| |    
T  38028862 tcatacttgaaccaagcttcatttcaaaacctgttgagtcaagccgaggaagaatttggatatgaccatccaatgggcggcctcacaattccttgcacag 38028763  T
Q  147 aaga 150  Q
    ||||    
T  38028762 aaga 38028759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 38040177 - 38040074
Alignment:
Q  47 tcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcatcaccattccttgcaccg 146  Q
    ||||||||||||||| | ||||||||| || | |||||||||   |||||||| || |||||||| ||||| ||||| ||| |||| ||||||||||| |    
T  38040177 tcatacttgaaccaagcttcatttcaaaacctgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgcacag 38040078  T
Q  147 aaga 150  Q
    ||||    
T  38040077 aaga 38040074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 26 - 151
Target Start/End: Complemental strand, 38033896 - 38033767
Alignment:
Q  26 aagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcc----catg 121  Q
    ||||||| ||| ||||| |  ||||||||||||||| | ||||||||| |||| |||||||||   |||||||| ||||||||||| |||||     |||    
T  38033896 aagcggtttgttatccccacgtcatacttgaaccaagcttcatttcaaaacttgttgagtcaagccgaggaagaatttggatatgaccatccaattaatg 38033797  T
Q  122 ggtggcatcaccattccttgcaccgaagat 151  Q
    || |||||||| ||||| ||||| ||||||    
T  38033796 ggcggcatcacaattccctgcacagaagat 38033767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 48 - 144
Target Start/End: Complemental strand, 38036888 - 38036792
Alignment:
Q  48 catacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcatcaccattccttgcac 144  Q
    |||||||||||||| | ||||||||| | || |||||||||   |||||||| || |||||||| ||||| ||||| ||| |||| |||||||||||    
T  38036888 catacttgaaccaagcttcatttcaaaatttgttgagtcaagccgaggaagaattcggatatgaccatccaatgggcggcctcacaattccttgcac 38036792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 57; Significance: 1e-23; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 5 - 153
Target Start/End: Complemental strand, 21607434 - 21607286
Alignment:
Q  5 gtatatgttggagagaaacaaaagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttg 104  Q
    ||||||||||||||| ||   ||||||| ||| ||||| || ||||||||||||| | | || |||||| ||||||||||||||   |||||||| ||||    
T  21607434 gtatatgttggagagcaaatgaagcggtttgttatccccatgtcatacttgaaccgagcttcctttcaaaacttattgagtcaagcagaggaagaatttg 21607335  T
Q  105 gatatgatcatcccatgggtggcatcaccattccttgcaccgaagatat 153  Q
    |||||||||| || ||||||||| ||||  |||||||||| ||||||||    
T  21607334 gatatgatcacccaatgggtggcctcacggttccttgcacagaagatat 21607286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 47 - 150
Target Start/End: Complemental strand, 21604850 - 21604747
Alignment:
Q  47 tcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcatcaccattccttgcaccg 146  Q
    ||||||||||||||| | ||||||||| || | |||||||||   |||||||| || |||||||| ||||| ||||| ||| |||| ||||||||||| |    
T  21604850 tcatacttgaaccaagcttcatttcaaaacatgttgagtcaagacgaggaagaattaggatatgaccatccaatgggcggcctcacaattccttgcacag 21604751  T
Q  147 aaga 150  Q
    ||||    
T  21604750 aaga 21604747  T

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Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 68 - 151
Target Start/End: Original strand, 21634608 - 21634691
Alignment:
Q  68 tttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtggcatcaccattccttgcaccgaagat 151  Q
    |||||||||||  ||||||||   |||||||| ||||||||||||||||  ||||| ||| |||| ||||||||||||||||||    
T  21634608 tttcaagacttgctgagtcaagcagaggaagaatttggatatgatcatcgaatgggcggcttcacaattccttgcaccgaagat 21634691  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 26 - 151
Target Start/End: Original strand, 3073592 - 3073717
Alignment:
Q  26 aagcggtatgtaatcccaatatcatacttgaaccaaccatcatttcaagacttattgagtcaatttgaggaagagtttggatatgatcatcccatgggtg 125  Q
    ||||||| ||| ||||| |  ||||||||||||||| | ||||||||| ||||  ||||||     |||||||| || ||||| |||||||| |||||||    
T  3073592 aagcggtttgtgatccctacgtcatacttgaaccaaacttcatttcaatacttgctgagtcgggcagaggaagaattcggatacgatcatccaatgggtg 3073691  T
Q  126 gcatcaccattccttgcaccgaagat 151  Q
    || |||| ||||||||||| ||||||    
T  3073692 gcctcacaattccttgcacagaagat 3073717  T

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