View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21569_high_4 (Length: 389)

Name: NF21569_high_4
Description: NF21569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21569_high_4
NF21569_high_4
[»] chr3 (4 HSPs)
chr3 (19-382)||(31602568-31602931)
chr3 (275-361)||(31605024-31605110)
chr3 (161-257)||(31605157-31605253)
chr3 (19-57)||(31605358-31605396)
[»] chr4 (6 HSPs)
chr4 (275-365)||(49778213-49778303)
chr4 (276-365)||(7991009-7991098)
chr4 (161-223)||(49778608-49778670)
chr4 (162-227)||(7990642-7990707)
chr4 (19-58)||(7990498-7990537)
chr4 (19-58)||(49778774-49778813)


Alignment Details
Target: chr3 (Bit Score: 327; Significance: 0; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 327; E-Value: 0
Query Start/End: Original strand, 19 - 382
Target Start/End: Complemental strand, 31602931 - 31602568
Alignment:
Q  19 aaaaccctgctgaaaccaatccaaaatttctgaacataacatcgcagagctaccgatcaactagctcttgaactactacccaagtggtggagcgtacatc 118  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31602931 aaaaccctgctgaaaccaatccaaaatttctgaacataacatcggagagctaccgatcaactagctcttgaactactacccaagtggtggagcgtacatc 31602832  T
Q  119 ataacttgctgataagattttcaatccnnnnnnnatcgaaatcttctctcctcataatactttcaggaggggatgacatgtatttttgaacagatttcag 218  Q
    |||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31602831 ataacttgctgataagattttcaatcctttttttatcgaaatcttctctcctcataatactttcaggaggggatgacatgtatttttgaacagatttcag 31602732  T
Q  219 acatggacatactagttactccatgcagatatggtctctcttagacatggatatttttcattgtaaatcaaaaactcagggtgtacagtagaaagagatg 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  31602731 acatggacatactagttactccatgcagatatggtctctcttagacatggatatttttcattgtaaatcaaaaactcagggtgtacagtagaaagtgatg 31602632  T
Q  319 accaacgatgaacgaaaatactttcttcgaccatgcatgattgatacgtacaacaattcatctc 382  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||    
T  31602631 accaacgatgaacgaaaatactttcttcgaccatgcatgatggatacgtacgacaattcatctc 31602568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 275 - 361
Target Start/End: Complemental strand, 31605110 - 31605024
Alignment:
Q  275 ttcattgtaaatcaaaaactcagggtgtacagtagaaagagatgaccaacgatgaacgaaaatactttcttcgaccatgcatgattg 361  Q
    |||||||||||||||||||||| |||||| | ||||||  |||| ||||||||||| ||||||||||||||||||||||||||||||    
T  31605110 ttcattgtaaatcaaaaactcatggtgtagaatagaaactgatggccaacgatgaaggaaaatactttcttcgaccatgcatgattg 31605024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 161 - 257
Target Start/End: Complemental strand, 31605253 - 31605157
Alignment:
Q  161 cttctctcctcataatactttcaggaggggatgacatgtatttttgaacagatttcagacatggacatactagttactccatgcagatatggtctct 257  Q
    |||||||||| | ||||| || |||||||||||||||||||||| ||||||||||   ||||||||| |||  |||||||||||||||||| |||||    
T  31605253 cttctctccttaaaatacgttaaggaggggatgacatgtattttcgaacagattttgaacatggacacactcattactccatgcagatatgttctct 31605157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 31605396 - 31605358
Alignment:
Q  19 aaaaccctgctgaaaccaatccaaaatttctgaacataa 57  Q
    ||||||||| |||||||||||||||||||||||||||||    
T  31605396 aaaaccctggtgaaaccaatccaaaatttctgaacataa 31605358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 2e-22; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 275 - 365
Target Start/End: Complemental strand, 49778303 - 49778213
Alignment:
Q  275 ttcattgtaaatcaaaaactcagggtgtacagtagaaagagatgaccaacgatgaacgaaaatactttcttcgaccatgcatgattgatac 365  Q
    ||||||||||| || |||||| ||||||||||||||||  |||||||||||||||| |||||||||||| || ||||||||||| ||||||    
T  49778303 ttcattgtaaaccagaaactcggggtgtacagtagaaactgatgaccaacgatgaatgaaaatactttcatcaaccatgcatgactgatac 49778213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 276 - 365
Target Start/End: Original strand, 7991009 - 7991098
Alignment:
Q  276 tcattgtaaatcaaaaactcagggtgtacagtagaaagagatgaccaacgatgaacgaaaatactttcttcgaccatgcatgattgatac 365  Q
    |||||||||| || |||||| ||| |||||||||| |  |||||||||||||||| |||||||||||| || ||||||||||| ||||||    
T  7991009 tcattgtaaaccagaaactcggggcgtacagtagagaccgatgaccaacgatgaatgaaaatactttcatcaaccatgcatgactgatac 7991098  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 161 - 223
Target Start/End: Complemental strand, 49778670 - 49778608
Alignment:
Q  161 cttctctcctcataatactttcaggaggggatgacatgtatttttgaacagatttcagacatg 223  Q
    |||||||||||| |||| |||||||||||| ||||||||||||| |||| ||||||| |||||    
T  49778670 cttctctcctcaaaatagtttcaggaggggctgacatgtattttcgaactgatttcaaacatg 49778608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 162 - 227
Target Start/End: Original strand, 7990642 - 7990707
Alignment:
Q  162 ttctctcctcataatactttcaggaggggatgacatgtatttttgaacagatttcagacatggaca 227  Q
    ||||||||||| |||| |||||||||||| ||||||||||||| |||| | |||||| ||||||||    
T  7990642 ttctctcctcaaaatagtttcaggaggggctgacatgtattttcgaactgttttcaggcatggaca 7990707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 58
Target Start/End: Original strand, 7990498 - 7990537
Alignment:
Q  19 aaaaccctgctgaaaccaatccaaaatttctgaacataac 58  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  7990498 aaaaccctgttgaaaccaatccaaaatttctgaaaataac 7990537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 49778813 - 49778774
Alignment:
Q  19 aaaaccctgctgaaaccaatccaaaatttctgaacataac 58  Q
    ||||||||| |||||||||||||||||||||||| |||||    
T  49778813 aaaaccctgttgaaaccaatccaaaatttctgaaaataac 49778774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University