View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21569_high_7 (Length: 272)
Name: NF21569_high_7
Description: NF21569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21569_high_7 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 193; Significance: 1e-105; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 29 - 272
Target Start/End: Original strand, 39734062 - 39734306
Alignment:
| Q |
29 |
gattacgaagactcta-ccctaagcagagtagggttgacacacagnnnnnnnntactaatgaataatagaaaaatatggatacctacctatacatgtaga |
127 |
Q |
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| T |
39734062 |
gattacgaagactcttgccctaggcagagtagggtttacacacagaaaaaaaatactaatgaataatagaaaaatatggatacctacctatacatgtaga |
39734161 |
T |
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| Q |
128 |
tgtctcgaccaggagccaaacgacaattacagaggccacaagttcggagaaagtgaggtgtactatgtatgacatcatgggcactcacactcaaaggatt |
227 |
Q |
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| T |
39734162 |
tgtctcgaccaggagccaaacgacaattacagaggccacaagttcggagaaagtgaggtgtactatgtatgacatcatgggcactcgcactcaaaggatt |
39734261 |
T |
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| Q |
228 |
aataatattgttagtgtgtgatgggaacatgactgcactacccac |
272 |
Q |
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| T |
39734262 |
aataatattgttagtgtgtgaagggaacatgactgcactacccac |
39734306 |
T |
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