View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21569_high_9 (Length: 219)

Name: NF21569_high_9
Description: NF21569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21569_high_9
NF21569_high_9
[»] chr3 (21 HSPs)
chr3 (20-201)||(23162078-23162259)
chr3 (20-202)||(40195903-40196087)
chr3 (67-202)||(43978658-43978793)
chr3 (67-193)||(54017640-54017767)
chr3 (20-173)||(17732016-17732169)
chr3 (20-173)||(19033247-19033400)
chr3 (129-202)||(43481590-43481663)
chr3 (20-190)||(16143329-16143501)
chr3 (124-202)||(23162432-23162510)
chr3 (123-192)||(43978962-43979031)
chr3 (123-201)||(23161836-23161913)
chr3 (20-201)||(32201214-32201397)
chr3 (133-200)||(48127679-48127746)
chr3 (136-202)||(23161913-23161979)
chr3 (75-192)||(32200987-32201104)
chr3 (123-201)||(48127899-48127977)
chr3 (123-201)||(53595956-53596034)
chr3 (123-201)||(53596271-53596349)
chr3 (129-173)||(16871071-16871115)
chr3 (133-178)||(53981541-53981586)
chr3 (124-196)||(42059884-42059956)
[»] chr8 (11 HSPs)
chr8 (19-196)||(5981531-5981709)
chr8 (20-202)||(2954308-2954492)
chr8 (129-201)||(5981817-5981889)
chr8 (129-196)||(29103303-29103370)
chr8 (124-202)||(14028322-14028400)
chr8 (129-191)||(2954602-2954664)
chr8 (135-192)||(3671234-3671291)
chr8 (144-190)||(3670894-3670940)
chr8 (140-202)||(4840531-4840593)
chr8 (129-173)||(12156770-12156814)
chr8 (129-203)||(11576046-11576119)
[»] chr6 (11 HSPs)
chr6 (22-202)||(7301383-7301564)
chr6 (129-173)||(21130169-21130213)
chr6 (129-173)||(22605367-22605411)
chr6 (123-202)||(7301667-7301746)
chr6 (20-112)||(15092241-15092335)
chr6 (124-202)||(21297216-21297294)
chr6 (19-97)||(22605165-22605242)
chr6 (132-193)||(22605112-22605173)
chr6 (148-193)||(22612330-22612375)
chr6 (124-186)||(6250081-6250143)
chr6 (72-192)||(11637814-11637934)
[»] chr5 (15 HSPs)
chr5 (20-193)||(41341348-41341521)
chr5 (20-193)||(14168826-14169000)
chr5 (129-193)||(5963685-5963749)
chr5 (129-201)||(41340281-41340353)
chr5 (82-201)||(13042495-13042613)
chr5 (129-174)||(3294927-3294972)
chr5 (88-191)||(13042673-13042776)
chr5 (88-191)||(13112671-13112774)
chr5 (123-195)||(33036231-33036303)
chr5 (82-201)||(13112493-13112611)
chr5 (101-201)||(13042970-13043070)
chr5 (101-201)||(13112966-13113066)
chr5 (123-202)||(5038442-5038521)
chr5 (123-168)||(3455872-3455917)
chr5 (129-201)||(34103556-34103628)
[»] chr4 (21 HSPs)
chr4 (23-176)||(47681051-47681208)
chr4 (20-147)||(47680804-47680933)
chr4 (20-201)||(11197119-11197300)
chr4 (72-202)||(11307662-11307792)
chr4 (67-201)||(10396356-10396490)
chr4 (67-196)||(11307379-11307505)
chr4 (123-191)||(10396127-10396195)
chr4 (72-194)||(51681195-51681316)
chr4 (23-202)||(51681435-51681613)
chr4 (82-202)||(47680575-47680696)
chr4 (95-202)||(48635128-48635236)
chr4 (129-172)||(1868053-1868096)
chr4 (123-190)||(34946500-34946566)
chr4 (73-198)||(34946198-34946323)
chr4 (74-147)||(47680316-47680390)
chr4 (20-202)||(8445753-8445930)
chr4 (20-113)||(26473482-26473577)
chr4 (134-185)||(11196939-11196990)
chr4 (132-202)||(26473686-26473753)
chr4 (123-186)||(53468096-53468159)
chr4 (133-201)||(922424-922492)
[»] chr1 (13 HSPs)
chr1 (20-192)||(31973428-31973601)
chr1 (123-202)||(15327852-15327931)
chr1 (20-202)||(43834387-43834570)
chr1 (123-202)||(4392275-4392354)
chr1 (25-191)||(4392004-4392163)
chr1 (129-195)||(25294877-25294943)
chr1 (20-186)||(34665908-34666075)
chr1 (124-191)||(27686618-27686685)
chr1 (129-201)||(5821728-5821800)
chr1 (122-191)||(12466278-12466347)
chr1 (129-191)||(6182374-6182436)
chr1 (129-202)||(26231738-26231809)
chr1 (123-201)||(31973710-31973788)
[»] chr2 (11 HSPs)
chr2 (20-202)||(40053345-40053529)
chr2 (73-202)||(19548091-19548219)
chr2 (123-201)||(28226333-28226411)
chr2 (123-192)||(35448708-35448777)
chr2 (123-192)||(13792587-13792656)
chr2 (129-193)||(19547871-19547935)
chr2 (123-201)||(30219965-30220043)
chr2 (136-191)||(40801168-40801223)
chr2 (67-196)||(11727735-11727864)
chr2 (124-190)||(22062887-22062953)
chr2 (129-202)||(35027905-35027978)
[»] chr7 (16 HSPs)
chr7 (20-172)||(11776177-11776323)
chr7 (67-190)||(2463096-2463220)
chr7 (20-162)||(8802385-8802528)
chr7 (129-202)||(11776430-11776503)
chr7 (129-201)||(48071388-48071460)
chr7 (67-201)||(27597925-27598059)
chr7 (20-201)||(21416225-21416406)
chr7 (19-202)||(23578087-23578271)
chr7 (129-194)||(22561956-22562021)
chr7 (123-202)||(27938756-27938835)
chr7 (124-202)||(2463442-2463520)
chr7 (132-190)||(36675198-36675256)
chr7 (129-202)||(45100186-45100259)
chr7 (73-188)||(24903639-24903754)
chr7 (123-191)||(27597696-27597763)
chr7 (123-191)||(28445226-28445293)
[»] scaffold0548 (1 HSPs)
scaffold0548 (72-202)||(4151-4282)
[»] scaffold0256 (1 HSPs)
scaffold0256 (123-202)||(13365-13444)
[»] scaffold0160 (1 HSPs)
scaffold0160 (129-202)||(27531-27604)


Alignment Details
Target: chr3 (Bit Score: 150; Significance: 2e-79; HSPs: 21)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 23162078 - 23162259
Alignment:
Q  20 tggtatcagagccctggttaggctcggtggggagagggagcgagattctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggggattgg 119  Q
    |||||| ||||||||||||||||||||| ||||| |||||||||||||||| |||||||| ||||||||||||||||||| |||||||||||||||||||    
T  23162078 tggtattagagccctggttaggctcggttgggagcgggagcgagattctagtgtggatcaggctagtaatgtgggtgactcacacttgaggggggattgg 23162177  T
Q  120 tgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcata 201  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  23162178 tgagaaataaagtgtgagtgattatgtcccacatcgattaggaatggaggaaacgttggacatataagagaggggactcata 23162259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 40196087 - 40195903
Alignment:
Q  20 tggtatcagagccctggttaggctcggtgggg-agagggagcgagattctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggg-gatt 117  Q
    |||||||||||| ||||||||||| ||||||| || ||||||| ||| |||| |||||||| |||||| |||||||||||| ||||||||||||| ||||    
T  40196087 tggtatcagagctctggttaggcttggtggggtagcgggagcgggatcctagtgtggatcaggctagtgatgtgggtgactcacacttgagggggagatt 40195988  T
Q  118 ggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatat 202  Q
    | || ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| ||| |||||    
T  40195987 gttgggaaatcaagtgtgagtgattatgtttcacatcgactaggaatggaggaaacgttggatatataagagaggagacccatat 40195903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 67 - 202
Target Start/End: Complemental strand, 43978793 - 43978658
Alignment:
Q  67 ctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggg-gattggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatg 165  Q
    |||| ||||||||| ||||| |||||| ||| | ||||||||||||| ||||| ||  |||| ||||||||||||||||||| |||||||||||||||||    
T  43978793 ctagtgtggatcaaactagtgatgtgg-tgattcacacttgagggggagattgttggaaaatcaagtgtgagtgattatgtcccacatcgactaggaatg 43978695  T
Q  166 gaggaaacgttggacatataagagaggggactcatat 202  Q
    |||||||| ||||| |||||||||||| |||||||||    
T  43978694 gaggaaacattggatatataagagaggagactcatat 43978658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 67 - 193
Target Start/End: Complemental strand, 54017767 - 54017640
Alignment:
Q  67 ctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggg-gattggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatg 165  Q
    |||| |||||||| |||||| |||||||||| | ||||||||||||| ||||| || | ||| |||||||||||||||||||||||||||||||||||||    
T  54017767 ctagtgtggatcaggctagtgatgtgggtgattcacacttgagggggagattgttgggtaatcaagtgtgagtgattatgtctcacatcgactaggaatg 54017668  T
Q  166 gaggaaacgttggacatataagagaggg 193  Q
    || |||||   ||| |||||||||||||    
T  54017667 gaagaaacaaaggatatataagagaggg 54017640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 17732169 - 17732016
Alignment:
Q  20 tggtatcagagccctggttaggctcggtggggagagggagcgagattctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggg-gattg 118  Q
    ||||||||||||| ||||||||||| |||||||| ||||||| ||| ||||  ||||||| |||||| |||||| ||| | ||||||||| ||| | |||    
T  17732169 tggtatcagagccgtggttaggctcagtggggagcgggagcgggatcctagt-tggatcaggctagtgatgtggatgattcacacttgagtgggaggttg 17732071  T
Q  119 gtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaac 173  Q
     ||   ||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  17732070 ttggataatcaagtgtgagtgattatgtcccacatcgactaggaatggaggaaac 17732016  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 173
Target Start/End: Complemental strand, 19033400 - 19033247
Alignment:
Q  20 tggtatcagagccctggttaggctcggtggggagagggagcgagattctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggg-gattg 118  Q
    ||||||||||||| ||||||||||| |||||||| ||||||| ||| ||||  ||||||| |||||| |||||| ||| | ||||||||| ||| | |||    
T  19033400 tggtatcagagccgtggttaggctcagtggggagcgggagcgggatcctagt-tggatcaggctagtgatgtggatgattcacacttgagtgggaggttg 19033302  T
Q  119 gtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaac 173  Q
     ||   ||| ||||||||||||||||||| |||||||||||||||||||||||||    
T  19033301 ttggataatcaagtgtgagtgattatgtcccacatcgactaggaatggaggaaac 19033247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 43481590 - 43481663
Alignment:
Q  129 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatat 202  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||||    
T  43481590 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaatgttggatatataagagaggggacccatat 43481663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 190
Target Start/End: Original strand, 16143329 - 16143501
Alignment:
Q  20 tggtatcagagccctggttaggctcggtgg---ggagagggagcgagattctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggg-ga 115  Q
    ||||||||||||| |||||||||| | |||   |||| ||||||| |||||||| ||||||||  ||||| |||||||||| | ||||||||||||| ||    
T  16143329 tggtatcagagcc-tggttaggcttgctggacgggagtgggagcgggattctagtgtggatcatcctagtgatgtgggtgagtcacacttgagggggaga 16143427  T
Q  116 ttggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagaga 190  Q
    ||| || ||||| ||||||||||||| ||||  ||||||  |||| ||||||| ||| |||||| ||||||||||    
T  16143428 ttgttg-gaaatcaagtgtgagtgataatgttccacatctgctagaaatggagcaaatgttggatatataagaga 16143501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 23162510 - 23162432
Alignment:
Q  124 aaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatat 202  Q
    |||| ||||||||||||||||||| || ||||| || ||||||| |||||||| ||||||||||||||||||| |||||    
T  23162510 aaatcaagtgtgagtgattatgtcccatatcgattatgaatggatgaaacgttagacatataagagaggggacacatat 23162432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 43979031 - 43978962
Alignment:
Q  123 gaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagagg 192  Q
    ||||| || |||||||||||||||| ||||||||||| ||||||||||||||||||   |||||||||||    
T  43979031 gaaatcaaatgtgagtgattatgtcccacatcgactaagaatggaggaaacgttgggtgtataagagagg 43978962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 23161836 - 23161913
Alignment:
Q  123 gaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcata 201  Q
    ||||| ||||||||||||||||||| ||||||||||| |||| |||||||  || || |||||||||||| ||||||||    
T  23161836 gaaatcaagtgtgagtgattatgtc-cacatcgactaagaatagaggaaatattagatatataagagaggtgactcata 23161913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 32201214 - 32201397
Alignment:
Q  20 tggtatcagagccctggttaggctcggtgggg--agagggagcgagattctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggg-gat 116  Q
    ||||||||||||||||||| |||||  | |||  || ||||||| ||| |||| || | || | ||||| |||||||||| | ||||||||||||| |||    
T  32201214 tggtatcagagccctggttgggctccattggggaagtgggagcgggatcctagtgtaggtccaactagtgatgtgggtgagtcacacttgagggggagat 32201313  T
Q  117 tggtgagaaataaagtgtgag-tgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcata 201  Q
    || | |||||| |||||| || ||||||||| ||  |||||| ||  |||||||||||||| || |||||||||||||||| ||||    
T  32201314 tgtt-agaaatcaagtgtaagctgattatgt-tcctatcgacaagagatggaggaaacgttagatatataagagaggggacacata 32201397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 200
Target Start/End: Complemental strand, 48127746 - 48127679
Alignment:
Q  133 gtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcat 200  Q
    ||||| ||||||||| ||| |||||||  ||||||||||||||| || |||||||||||| |||||||    
T  48127746 gtgagggattatgtcccacgtcgactacaaatggaggaaacgtttgatatataagagaggagactcat 48127679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 136 - 202
Target Start/End: Original strand, 23161913 - 23161979
Alignment:
Q  136 agtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatat 202  Q
    ||||||||||||   ||||||||| ||||||||||||| || || |||||||||||| |||||||||    
T  23161913 agtgattatgtcctgcatcgactaagaatggaggaaacattagatatataagagaggtgactcatat 23161979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 192
Target Start/End: Original strand, 32200987 - 32201104
Alignment:
Q  75 gatcaagctagtaatgtgggtgactaacacttgaggggg-gattggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaac 173  Q
    ||||| |||||| |||||||||| | || ||| |||||| ||||| || |||  ||| ||||||||||||||||||||||||||||  |||| ||||||     
T  32200987 gatcatgctagtgatgtgggtgagtcacgcttaagggggagattgttgggaatcaaa-tgtgagtgattatgtctcacatcgactaaaaatgaaggaaat 32201085  T
Q  174 gttggacatataagagagg 192  Q
    ||| || ||| ||||||||    
T  32201086 gtttgatatacaagagagg 32201104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 201
Target Start/End: Complemental strand, 48127977 - 48127899
Alignment:
Q  123 gaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcata 201  Q
    ||||| || |||||||||||||||| |||||| ||||  ||||| ||||||||| || |||||||||||| ||| ||||    
T  48127977 gaaatcaaatgtgagtgattatgtcacacatcaactataaatggtggaaacgtttgatatataagagaggagacccata 48127899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 53595956 - 53596034
Alignment:
Q  123 gaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcata 201  Q
    ||||| ||||| ||||||||||||| ||||| |||||| ||| ||| ||| |||||| |||||||||||| ||| ||||    
T  53595956 gaaatcaagtgcgagtgattatgtcccacattgactagaaatagagaaaatgttggatatataagagaggagacccata 53596034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 53596271 - 53596349
Alignment:
Q  123 gaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcata 201  Q
    ||||| ||||| ||||||||||||| ||||| |||||| ||| ||| ||| |||||| |||||||||||| ||| ||||    
T  53596271 gaaatcaagtgcgagtgattatgtcccacattgactagaaatagagaaaatgttggatatataagagaggagacccata 53596349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 16871115 - 16871071
Alignment:
Q  129 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaac 173  Q
    ||||||||||||||||||| |||||||| | ||||||||||||||    
T  16871115 aagtgtgagtgattatgtcccacatcgatttggaatggaggaaac 16871071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 133 - 178
Target Start/End: Original strand, 53981541 - 53981586
Alignment:
Q  133 gtgagtgattatgtctcacatcgactaggaatggaggaaacgttgg 178  Q
    ||||||||||| ||| |||||||||||| ||||||||||| |||||    
T  53981541 gtgagtgattaagtcccacatcgactagaaatggaggaaatgttgg 53981586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 124 - 196
Target Start/End: Complemental strand, 42059956 - 42059884
Alignment:
Q  124 aaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggac 196  Q
    |||| |||||||||||||||||||| |||| || |||  || ||||||  ||| || ||||||||||||||||    
T  42059956 aaatcaagtgtgagtgattatgtcttacattgattagacatagaggaattgtttgatatataagagaggggac 42059884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 107; Significance: 8e-54; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 19 - 196
Target Start/End: Complemental strand, 5981709 - 5981531
Alignment:
Q  19 atggtatcagagccctggttaggctcggtggggagagggagcgagattctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggg-gatt 117  Q
    ||||||||||| ||||||||||||||||||||||| ||||||| ||| |||| |||||||| |||||| |||||||||||| || |||||||||| ||||    
T  5981709 atggtatcagaaccctggttaggctcggtggggagtgggagcgggatcctagtgtggatcaggctagtgatgtgggtgactcacgcttgagggggagatt 5981610  T
Q  118 ggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggac 196  Q
    | |  ||||| ||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||    
T  5981609 gtttggaaatcaagtgtgagtgattatgtcccacatcgactaggaatggagaaaacgttggatatataagagaggggac 5981531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 20 - 202
Target Start/End: Complemental strand, 2954492 - 2954308
Alignment:
Q  20 tggtatcagagccct-ggttaggctcggtgggg-agagggagcgagattctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggg-gat 116  Q
    |||| |||||||||| ||||||||||||||||| || |||||| |||| |||| ||||||||||||||| |||||||||||| ||||||||||||| |||    
T  2954492 tggtttcagagcccttggttaggctcggtgggggagtgggagcaagatcctagtgtggatcaagctagtgatgtgggtgactcacacttgagggggagat 2954393  T
Q  117 tggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatat 202  Q
    || ||||   | |||||||||||||||| || |||||||||||||||||||| ||| |||||| |||||||||||| ||| |||||    
T  2954392 tgttgagtt-tcaagtgtgagtgattatttcccacatcgactaggaatggagaaaatgttggatatataagagaggagacccatat 2954308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 129 - 201
Target Start/End: Complemental strand, 5981889 - 5981817
Alignment:
Q  129 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcata 201  Q
    ||||||||| ||||||||| |||||| | |||||||||||||||||||||| |||||||||||||||| ||||    
T  5981889 aagtgtgagggattatgtcccacatcaattaggaatggaggaaacgttggatatataagagaggggacccata 5981817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 129 - 196
Target Start/End: Complemental strand, 29103370 - 29103303
Alignment:
Q  129 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggac 196  Q
    |||||||||| || ||||||||||||||||||||||||||||||||||| | |||||||||| |||||    
T  29103370 aagtgtgagtaatcatgtctcacatcgactaggaatggaggaaacgttgaaaatataagagaagggac 29103303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 124 - 202
Target Start/End: Original strand, 14028322 - 14028400
Alignment:
Q  124 aaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatat 202  Q
    |||| |||||||||||||||||||  ||||||||||||||| |||||||| ||||| |||||||||||  |||||||||    
T  14028322 aaatcaagtgtgagtgattatgtcctacatcgactaggaatagaggaaacattggatatataagagagcagactcatat 14028400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 191
Target Start/End: Complemental strand, 2954664 - 2954602
Alignment:
Q  129 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagag 191  Q
    ||||||||||||||||||| ||||| |||||||||||||| ||| |||||| |||||||||||    
T  2954664 aagtgtgagtgattatgtcccacatagactaggaatggagaaaatgttggatatataagagag 2954602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 135 - 192
Target Start/End: Complemental strand, 3671291 - 3671234
Alignment:
Q  135 gagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagagg 192  Q
    ||||||||||||| ||||||||||||||||  ||||||||||||| ||||||||||||    
T  3671291 gagtgattatgtcccacatcgactaggaatataggaaacgttggatatataagagagg 3671234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 144 - 190
Target Start/End: Complemental strand, 3670940 - 3670894
Alignment:
Q  144 tgtctcacatcgactaggaatggaggaaacgttggacatataagaga 190  Q
    ||||||||||||||||| |||||||||||||||||| ||||||||||    
T  3670940 tgtctcacatcgactagaaatggaggaaacgttggatatataagaga 3670894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 140 - 202
Target Start/End: Original strand, 4840531 - 4840593
Alignment:
Q  140 attatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatat 202  Q
    |||||||| |||||||| || ||||||||||||| ||||| ||||||||||||||||| ||||    
T  4840531 attatgtcccacatcgaatatgaatggaggaaacattggatatataagagaggggacttatat 4840593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 12156814 - 12156770
Alignment:
Q  129 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaac 173  Q
    ||||||||||||||||||| |||||||| ||||||||||||||||    
T  12156814 aagtgtgagtgattatgtcccacatcgattaggaatggaggaaac 12156770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 203
Target Start/End: Original strand, 11576046 - 11576119
Alignment:
Q  129 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatatg 203  Q
    |||||||||| |||||||| ||| ||||||| ||||| | |||| |||||| |||||||||||| ||| ||||||    
T  11576046 aagtgtgagtcattatgtcccacgtcgactaagaatgaaagaaa-gttggatatataagagaggagacacatatg 11576119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 22 - 202
Target Start/End: Complemental strand, 7301564 - 7301383
Alignment:
Q  22 gtatcagagccctggttaggctcggtgggg-agagggagcgagattctagcgtggatcaagctagtaatgtgggtgactaacacttgagggggg-attgg 119  Q
    ||||||||||| |||||||||||| ||||| || ||||||| ||| |||  |||||||| |||||| |||||||||| | ||| |||||| ||  ||||     
T  7301564 gtatcagagccatggttaggctcgatgggggagtgggagcgggatcctaatgtggatcaggctagtgatgtgggtgagtcacagttgaggaggatattgt 7301465  T
Q  120 tgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatat 202  Q
    ||| |||| ||||||||||||||||||| |||||||||||| |||||||||||||||||| |||||||| ||||||| |||||    
T  7301464 tga-aaattaagtgtgagtgattatgtcccacatcgactagaaatggaggaaacgttggatatataagaaaggggacacatat 7301383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 21130213 - 21130169
Alignment:
Q  129 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaac 173  Q
    ||||||||||||||||||| |||||||||||||||||||||||||    
T  21130213 aagtgtgagtgattatgtcccacatcgactaggaatggaggaaac 21130169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 173
Target Start/End: Complemental strand, 22605411 - 22605367
Alignment:
Q  129 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaac 173  Q
    ||||||||||||||||||  |||||||||||||||||||||||||    
T  22605411 aagtgtgagtgattatgttccacatcgactaggaatggaggaaac 22605367  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 7301746 - 7301667
Alignment:
Q  123 gaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatat 202  Q
    ||||| |||||||||| |||||||| |||||||||||  ||||||| ||| ||| || |||||| ||||||||| |||||    
T  7301746 gaaatcaagtgtgagtaattatgtcccacatcgactaaaaatggagaaaatgttagatatataaaagaggggacacatat 7301667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 20 - 112
Target Start/End: Original strand, 15092241 - 15092335
Alignment:
Q  20 tggtatcagagccctggtta-ggctcggtg-gggagagggagcgagattctagcgtggatcaagctagtaatgtgggtgactaacacttgagggg 112  Q
    ||||||||||||| |||||| ||||||||  ||||| ||||| | ||| |||| ||||||||  |||||||||| ||||||| ||||||||||||    
T  15092241 tggtatcagagccatggttaaggctcggtacgggagcgggagtgggatcctagtgtggatcagactagtaatgttggtgactcacacttgagggg 15092335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 202
Target Start/End: Complemental strand, 21297294 - 21297216
Alignment:
Q  124 aaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatat 202  Q
    |||| |||||||||||||| |||| |||||||||||||||||||  ||| ||||||  || ||||||| |||| |||||    
T  21297294 aaatcaagtgtgagtgattgtgtcccacatcgactaggaatggaaaaaatgttggatgtacaagagagcggacccatat 21297216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 97
Target Start/End: Complemental strand, 22605242 - 22605165
Alignment:
Q  19 atggtatcagagccctggttaggctcggtggggagagggagcgagattctagcgtggatcaagctagtaatgtgggtga 97  Q
    ||||||||| |||| ||||||||||| |||||||| ||||||| ||| |||| || ||||| |||||| ||||||||||    
T  22605242 atggtatcaaagccgtggttaggctcagtggggagcgggagcgggatcctagtgt-gatcaggctagtgatgtgggtga 22605165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 132 - 193
Target Start/End: Complemental strand, 22605173 - 22605112
Alignment:
Q  132 tgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggg 193  Q
    |||| ||||||||||| ||||||||||||||| |||||||||   ||| |||||||||||||    
T  22605173 tgtgggtgattatgtcccacatcgactaggaacggaggaaacaaaggatatataagagaggg 22605112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 193
Target Start/End: Complemental strand, 22612375 - 22612330
Alignment:
Q  148 tcacatcgactaggaatggaggaaacgttggacatataagagaggg 193  Q
    ||||||||| ||||||||| |||||||||||| |||||||||||||    
T  22612375 tcacatcgattaggaatggtggaaacgttggatatataagagaggg 22612330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 186
Target Start/End: Original strand, 6250081 - 6250143
Alignment:
Q  124 aaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataa 186  Q
    |||| ||||||||||||||||||| |||||||| ||   |||||||||| |||||| ||||||    
T  6250081 aaatcaagtgtgagtgattatgtcccacatcgattaaacatggaggaaatgttggatatataa 6250143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 72 - 192
Target Start/End: Complemental strand, 11637934 - 11637814
Alignment:
Q  72 gtggatcaagctagtaatgtgggtgactaacacttgaggggg-gattggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggagga 170  Q
    ||||||||  ||||| |||||| ||| | ||||||||||||  ||||| ||| |||| ||||||||||||| |||||  ||||||||||| | || || |    
T  11637934 gtggatcattctagtcatgtggttgagtcacacttgaggggaagattgttga-aaatcaagtgtgagtgataatgtccaacatcgactagaagtgaagca 11637836  T
Q  171 aacgttggacatataagagagg 192  Q
    ||| ||| | ||||||||||||    
T  11637835 aacattgaatatataagagagg 11637814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 67; Significance: 6e-30; HSPs: 15)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 41341348 - 41341521
Alignment:
Q  20 tggtatcagagccctggttaggctcggtggggagagggagcgagattctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggg-gattg 118  Q
    |||||| |||||| ||||||||||| |||||||| | ||||| ||| |||| |||||||| |||||| |||||||||| | ||||||||||||| ||||     
T  41341348 tggtattagagccgtggttaggctcagtggggagcgagagcgggatcctagtgtggatcaggctagtgatgtgggtgattcacacttgagggggagatta 41341447  T
Q  119 gtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggg 193  Q
     || | ||| ||||||||||||||||||| ||||| |||||||||||||||| ||   ||| |||||||||||||    
T  41341448 ttgggtaatcaagtgtgagtgattatgtcccacat-gactaggaatggaggagacaaaggatatataagagaggg 41341521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 1e-27
Query Start/End: Original strand, 20 - 193
Target Start/End: Original strand, 14168826 - 14169000
Alignment:
Q  20 tggtatcagagccctggttaggctcggtggggagagggagcgagattctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggg-gattg 118  Q
    ||||||||||||| ||||||||||  |||||||| |||| |  |||||||| |||||||| |||||| |||||| ||| | | ||||||||||| |||||    
T  14168826 tggtatcagagccgtggttaggcttagtggggagcgggaacaggattctagtgtggatcatgctagtgatgtggatgattcatacttgagggggagattg 14168925  T
Q  119 gtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggg 193  Q
     ||   ||| |||||| || ||||||||| |||||||||||||||||||||||||   ||| |||||||||||||    
T  14168926 ttggataatcaagtgtaagggattatgtcccacatcgactaggaatggaggaaacaaaggatatataagagaggg 14169000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 5963685 - 5963749
Alignment:
Q  129 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggg 193  Q
    ||||||| ||||||||||| |||||||||||||||||||||||||   ||| |||||||||||||    
T  5963685 aagtgtgtgtgattatgtcccacatcgactaggaatggaggaaacaaaggatatataagagaggg 5963749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 41340281 - 41340353
Alignment:
Q  129 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcata 201  Q
    ||||||||||||||||||| |||||||||||||||||||||| ||    || ||||||||||||| |||||||    
T  41340281 aagtgtgagtgattatgtcccacatcgactaggaatggaggagacaaaagatatataagagagggaactcata 41340353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 82 - 201
Target Start/End: Original strand, 13042495 - 13042613
Alignment:
Q  82 ctagtaatgtgggtgactaacacttgaggggggattggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggaca 181  Q
    ||||| |||||||||| | ||||||||| |||| ||| || ||||| ||||||||||||| || || |||||||||||| ||| ||| |||| || || |    
T  13042495 ctagtgatgtgggtgagtcacacttgagagggggttgttg-gaaatcaagtgtgagtgataatatcccacatcgactagaaatagagcaaacattagata 13042593  T
Q  182 tataagagaggggactcata 201  Q
    ||||||||||| ||| ||||    
T  13042594 tataagagaggagacccata 13042613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 174
Target Start/End: Complemental strand, 3294972 - 3294927
Alignment:
Q  129 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaacg 174  Q
    ||||||||||||||||||| || |||||||||||||||||||||||    
T  3294972 aagtgtgagtgattatgtcccatatcgactaggaatggaggaaacg 3294927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 191
Target Start/End: Original strand, 13042673 - 13042776
Alignment:
Q  88 atgtgggtgactaacacttgagggggg-attggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataa 186  Q
    |||||||||| | |||||||||||||| | || || ||||| ||||||||||||||||||  |||||| ||||| ||||||| |||| || || ||||||    
T  13042673 atgtgggtgagtcacacttgagggggggactgttg-gaaatcaagtgtgagtgattatgtgccacatcaactagaaatggagcaaacattagatatataa 13042771  T
Q  187 gagag 191  Q
    |||||    
T  13042772 gagag 13042776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 88 - 191
Target Start/End: Original strand, 13112671 - 13112774
Alignment:
Q  88 atgtgggtgactaacacttgagggggg-attggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataa 186  Q
    |||||||||| | |||||||||||||| | || || ||||| ||||||||||||||||||  |||||| ||||| ||||||| |||| || || ||||||    
T  13112671 atgtgggtgagtcacacttgagggggggactgttg-gaaatcaagtgtgagtgattatgtgccacatcaactagaaatggagcaaacattagatatataa 13112769  T
Q  187 gagag 191  Q
    |||||    
T  13112770 gagag 13112774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 123 - 195
Target Start/End: Complemental strand, 33036303 - 33036231
Alignment:
Q  123 gaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagagggga 195  Q
    ||||| ||||||||| |||||||| ||||||||| ||| ||||||||||| |  ||| |||||||||||||||    
T  33036303 gaaattaagtgtgagggattatgtttcacatcgattagaaatggaggaaatggaggaaatataagagagggga 33036231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 82 - 201
Target Start/End: Original strand, 13112493 - 13112611
Alignment:
Q  82 ctagtaatgtgggtgactaacacttgaggggggattggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggaca 181  Q
    ||||| |||||| ||| | ||||||||| |||| ||| || ||||| ||||||||||||| || || |||||||||||| ||| ||| |||| || || |    
T  13112493 ctagtgatgtggatgagtcacacttgagagggggttgttg-gaaatcaagtgtgagtgataatatcccacatcgactagaaatagagcaaacattagata 13112591  T
Q  182 tataagagaggggactcata 201  Q
    ||||||||||| ||| ||||    
T  13112592 tataagagaggagacccata 13112611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 201
Target Start/End: Original strand, 13042970 - 13043070
Alignment:
Q  101 acacttgaggggg-gattggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactca 199  Q
    ||||||||||||| ||||| || ||||| ||| ||||||||| || || |||||||||||| ||| ||| |||| ||||| |||||||||||| ||| ||    
T  13042970 acacttgagggggagattgttg-gaaatcaagagtgagtgataatctcccacatcgactagaaatagagcaaacattggatatataagagaggagaccca 13043068  T
Q  200 ta 201  Q
    ||    
T  13043069 ta 13043070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 201
Target Start/End: Original strand, 13112966 - 13113066
Alignment:
Q  101 acacttgaggggg-gattggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactca 199  Q
    ||||||||||||| ||||| || ||||| ||| ||||||||| || || |||||||||||| ||| ||| |||| ||||| |||||||||||| ||| ||    
T  13112966 acacttgagggggagattgttg-gaaatcaagagtgagtgataatctcccacatcgactagaaatagagcaaacattggatatataagagaggagaccca 13113064  T
Q  200 ta 201  Q
    ||    
T  13113065 ta 13113066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 5038442 - 5038521
Alignment:
Q  123 gaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatat 202  Q
    ||||| |||||||||| |||||||||||| |   |||| |||||||||||||||| | |||||| |||| | ||||||||    
T  5038442 gaaatcaagtgtgagtaattatgtctcacgtaagctagaaatggaggaaacgttgaatatataatagagagaactcatat 5038521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 123 - 168
Target Start/End: Original strand, 3455872 - 3455917
Alignment:
Q  123 gaaataaagtgtgagtgattatgtctcacatcgactaggaatggag 168  Q
    ||||| |||||||||||||| ||||||||||||||||  |||||||    
T  3455872 gaaatcaagtgtgagtgattgtgtctcacatcgactataaatggag 3455917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 34103556 - 34103628
Alignment:
Q  129 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcata 201  Q
    ||||||||||||||||||  |||||||| ||| |||||||||||    ||| ||||||||||| | |||||||    
T  34103556 aagtgtgagtgattatgttccacatcgaatagaaatggaggaaataaaggatatataagagagagaactcata 34103628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 67; Significance: 6e-30; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 23 - 176
Target Start/End: Original strand, 47681051 - 47681208
Alignment:
Q  23 tatcagagccctggttaggctcggtgggg-agagggagcgagattctagcgtggatcaagctagtaatgtgggtgactaacac--ttgaggggg-gattg 118  Q
    |||||||||||| ||||||||| |||||| || ||||| | ||| |||| | |||||| |||||| |||||||||||||||||  ||||||||| |||||    
T  47681051 tatcagagccctagttaggctcagtgggggagcgggagtgggatcctagtgaggatcaggctagtgatgtgggtgactaacacacttgagggggagattg 47681150  T
Q  119 gtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgtt 176  Q
     || ||||||||||||||||||||||||| | |||||| ||| |||||||||||||||    
T  47681151 ttgggaaataaagtgtgagtgattatgtcccgcatcgattagaaatggaggaaacgtt 47681208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 20 - 147
Target Start/End: Original strand, 47680804 - 47680933
Alignment:
Q  20 tggtatcagagccctggttaggctcggtgggg-agagggagcgagattctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggg-gatt 117  Q
    ||||||||||||||||||||||||| |||||| || ||||| | ||| |||| | |||||| |||||| |||||||||||| ||||||||||||| ||||    
T  47680804 tggtatcagagccctggttaggctcagtgggggagcgggagtgggatcctagtgaggatcaggctagtgatgtgggtgactcacacttgagggggagatt 47680903  T
Q  118 ggtgagaaataaagtgtgagtgattatgtc 147  Q
    | || ||||| |||||||||||||||||||    
T  47680904 gttgggaaatcaagtgtgagtgattatgtc 47680933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 20 - 201
Target Start/End: Original strand, 11197119 - 11197300
Alignment:
Q  20 tggtatcagagccctggttaggctcggtgggg-agagggagcgagattctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggg-gatt 117  Q
    ||||||||||||| | |||||||| | ||||| || ||||||| ||| || | ||||||||  ||||| |||||||||| ||||||||||  ||| ||||    
T  11197119 tggtatcagagcc-tagttaggcttgctgggggagtgggagcgggatcctggtgtggatcatcctagtgatgtgggtgagtaacacttgattgggagatt 11197217  T
Q  118 ggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcata 201  Q
    | | | |||  ||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||| ||| ||||    
T  11197218 gttaa-aaaccaagtgtgagtgattatgcctcacatcgactagaaatggaggaaacgttggatatataagagaggagacccata 11197300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 72 - 202
Target Start/End: Complemental strand, 11307792 - 11307662
Alignment:
Q  72 gtggatcaagctagtaatgtgggtgactaacacttgaggggg-gattggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggagga 170  Q
    ||||||||||||||| |||||| ||||| ||| ||||||||  ||||| | |||||| |||||||||||||| ||||||||||||||||  |||||||||    
T  11307792 gtggatcaagctagtgatgtggatgactcacatttgaggggaagattg-tcagaaattaagtgtgagtgattgtgtctcacatcgactataaatggagga 11307694  T
Q  171 aacgttggacatataagagaggggactcatat 202  Q
    || |||||| |||| ||||||||||| |||||    
T  11307693 aatgttggatatatgagagaggggacacatat 11307662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 67 - 201
Target Start/End: Original strand, 10396356 - 10396490
Alignment:
Q  67 ctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggg-gattggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatg 165  Q
    |||| ||||||||  ||||| ||||||| || | | ||||||||||| ||||| || ||||| |||||||||||||||||||||| || |||||| ||||    
T  10396356 ctagtgtggatcatcctagtgatgtgggcgagtcatacttgagggggagattgttg-gaaatcaagtgtgagtgattatgtctcatattgactagaaatg 10396454  T
Q  166 gaggaaacgttggacatataagagaggggactcata 201  Q
    ||||||| |||||| |||||||||||| ||| ||||    
T  10396455 gaggaaatgttggatatataagagaggagacccata 10396490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 67 - 196
Target Start/End: Complemental strand, 11307505 - 11307379
Alignment:
Q  67 ctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggggattggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatgg 166  Q
    |||| |||||||| |||||| ||||| |||| |  |||| |||||| ||||| | |||||| |||||||| ||| ||||||||||||| ||||| |||||    
T  11307505 ctagtgtggatcaggctagtgatgtgtgtgatt--cactcgaggggagattg-tcagaaatcaagtgtgactgactatgtctcacatcaactagaaatgg 11307409  T
Q  167 aggaaacgttggacatataagagaggggac 196  Q
    ||||||| ||||| ||||||||||||||||    
T  11307408 aggaaaccttggatatataagagaggggac 11307379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 10396127 - 10396195
Alignment:
Q  123 gaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagag 191  Q
    ||||| ||||||||||||||||||||||||||||| || ||||||||||| |||| | |||||||||||    
T  10396127 gaaatcaagtgtgagtgattatgtctcacatcgacaagaaatggaggaaatgttgaatatataagagag 10396195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 72 - 194
Target Start/End: Original strand, 51681195 - 51681316
Alignment:
Q  72 gtggatcaagctagtaatgtgggtgactaacacttgaggggg-gattggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggagga 170  Q
    |||||||| |||||| |||||||||||| |||||| ||   | ||||| || ||||| ||||||| ||||||||||||||  |||||||||||||||| |    
T  51681195 gtggatcaggctagtgatgtgggtgactcacacttaagttagagattgttgggaaatcaagtgtgggtgattatgtctca--tcgactaggaatggagaa 51681292  T
Q  171 aacgttggacatataagagagggg 194  Q
    ||| ||||| |||||||| |||||    
T  51681293 aacattggatatataagaaagggg 51681316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 23 - 202
Target Start/End: Original strand, 51681435 - 51681613
Alignment:
Q  23 tatcagagccctggttaggctcggtggggagagggagcgagattctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggg-gattggtg 121  Q
    ||||||||| || ||||||||| |||||| | ||||| ||||| |||  |||||||| || ||| |||||||||||| |||||||||||   ||||| ||    
T  51681435 tatcagagctctcgttaggctcagtgggg-gcgggagtgagatcctaatgtggatcaggccagtgatgtgggtgactcacacttgagggaaagattgctg 51681533  T
Q  122 agaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatat 202  Q
     |   | |||||| |||||||||||| ||||| |||||||||| ||||||| ||   | ||||||||||||||||||||||    
T  51681534 ggtt-tcaagtgtaagtgattatgtcccacattgactaggaattgaggaaatgtgaaatatataagagaggggactcatat 51681613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 82 - 202
Target Start/End: Original strand, 47680575 - 47680696
Alignment:
Q  82 ctagtaatgtgggtgactaacacttgaggggg-gattggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggac 180  Q
    ||||| || ||||||||| ||||||||||||  ||||| ||  |||| ||||||||||||||||||| |||||||| ||  |||||||||||| ||| |     
T  47680575 ctagtgatatgggtgactcacacttgaggggaagattgttggaaaattaagtgtgagtgattatgtcccacatcgattataaatggaggaaacattgaat 47680674  T
Q  181 atataagagaggggactcatat 202  Q
    ||||| |||||| ||| |||||    
T  47680675 atatatgagaggagacccatat 47680696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 202
Target Start/End: Complemental strand, 48635236 - 48635128
Alignment:
Q  95 tgactaacacttgagggg-ggattggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggg 193  Q
    ||||||||| |||||||| ||||| || |||  | ||||||||||||||||||| ||||| || ||  |||||||||||  ||| ||||||||||||||     
T  48635236 tgactaacatttgaggggaggatttgttagatttcaagtgtgagtgattatgtcccacattgattataaatggaggaaatattgaacatataagagagga 48635137  T
Q  194 gactcatat 202  Q
    |||||||||    
T  48635136 gactcatat 48635128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 129 - 172
Target Start/End: Original strand, 1868053 - 1868096
Alignment:
Q  129 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaa 172  Q
    ||||||||||||||||||| ||||||||||| ||||||||||||    
T  1868053 aagtgtgagtgattatgtcccacatcgactaagaatggaggaaa 1868096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 190
Target Start/End: Complemental strand, 34946566 - 34946500
Alignment:
Q  123 gaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagaga 190  Q
    ||||| ||||||| ||||| |||||||||||||||||| ||||||| |||||||||| || |||||||    
T  34946566 gaaatcaagtgtg-gtgataatgtctcacatcgactagaaatggagcaaacgttggatatttaagaga 34946500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 73 - 198
Target Start/End: Complemental strand, 34946323 - 34946198
Alignment:
Q  73 tggatcaagctagtaatgtgggtgactaacacttgaggggg-gattggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaa 171  Q
    |||||||  ||||| |||||||||| | ||||||||| ||| ||||| || ||||| ||||||||||||| ||||| |||||| ||| | ||||||| ||    
T  34946323 tggatcatcctagtgatgtgggtgagtcacacttgagagggagattgttg-gaaatcaagtgtgagtgataatgtcccacatcaacttgaaatggagcaa 34946225  T
Q  172 acgttggacatataagagaggggactc 198  Q
    |||||| | || |||| |||| |||||    
T  34946224 acgttgaatatttaagggaggagactc 34946198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 74 - 147
Target Start/End: Original strand, 47680316 - 47680390
Alignment:
Q  74 ggatcaagctagtaatgtgggtgactaacacttgaggggg-gattggtgagaaataaagtgtgagtgattatgtc 147  Q
    |||||| |||| | |||||||||||| ||| ||||||||| ||||| || ||||| |||||||||||||||||||    
T  47680316 ggatcaggctaatgatgtgggtgactcacagttgagggggagattgttgggaaatcaagtgtgagtgattatgtc 47680390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 8445753 - 8445930
Alignment:
Q  20 tggtatcagagccctggttaggctcggtgggg-agagggagcgagattctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggg-gatt 117  Q
    |||||||||||||||||||||||||||||||| || ||||| | ||| |||| |||||      |||| |||||||||| | ||||||||||||| ||||    
T  8445753 tggtatcagagccctggttaggctcggtggggtagcgggagtgggatcctagtgtgga------tagtgatgtgggtgaatcacacttgagggggagatt 8445846  T
Q  118 ggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatat 202  Q
    | || |   | |||| | |||||||||||| ||||||| |    |||| |||||| |||||| ||||||||||| |||| |||||    
T  8445847 gttg-ggtttcaagtctaagtgattatgtcccacatcggcacacaatgaaggaaatgttggatatataagagagaggacacatat 8445930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 113
Target Start/End: Complemental strand, 26473577 - 26473482
Alignment:
Q  20 tggtatcagagccctggttaggctcggt--ggggagagggagcgagattctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggg 113  Q
    ||||||||||||| |||||| |||||||  |||||| ||||||| ||| || |  ||||||| || ||| |||||||||||| ||| |||||||||    
T  26473577 tggtatcagagccttggttaagctcggtggggggagcgggagcgggatccttgtctggatcaggcaagtgatgtgggtgactcacaattgaggggg 26473482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 134 - 185
Target Start/End: Original strand, 11196939 - 11196990
Alignment:
Q  134 tgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatata 185  Q
    ||||| |||||||| |||||| ||||| |||||||||||||||||| |||||    
T  11196939 tgagtaattatgtcccacatcaactagaaatggaggaaacgttggatatata 11196990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 132 - 202
Target Start/End: Complemental strand, 26473753 - 26473686
Alignment:
Q  132 tgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatat 202  Q
    |||||||||||||  | |||||||| ||||||||||| |||| ||||| |||||||||| |||||||||||    
T  26473753 tgtgagtgattat--cccacatcgattaggaatggagaaaacattggatatataagaga-gggactcatat 26473686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 186
Target Start/End: Complemental strand, 53468159 - 53468096
Alignment:
Q  123 gaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataa 186  Q
    ||||| ||||||||||||| |||||||||||||| ||| ||||||| ||| |||| | ||||||    
T  53468159 gaaatcaagtgtgagtgataatgtctcacatcgattagaaatggagcaaatgttgaatatataa 53468096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 133 - 201
Target Start/End: Original strand, 922424 - 922492
Alignment:
Q  133 gtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcata 201  Q
    ||||||| ||||||| |||||||||||| |||| || ||||||| || ||| |||||||| ||| ||||    
T  922424 gtgagtgtttatgtcccacatcgactagaaatgaagcaaacgttagatatagaagagaggagacccata 922492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 6e-30; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 20 - 192
Target Start/End: Complemental strand, 31973601 - 31973428
Alignment:
Q  20 tggtatcagagccctggttaggctcggtgg-ggagagggagcgagattctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggg-gatt 117  Q
    |||||||| |||| |||||||||||| ||| |||| ||||||| ||| |||| ||||||||  ||||| ||||| |||| | ||||||||||||| ||||    
T  31973601 tggtatcaaagccttggttaggctcgatggaggagtgggagcgggatcctagtgtggatcagactagtgatgtgagtgagtcacacttgagggggagatt 31973502  T
Q  118 ggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagagg 192  Q
    | || ||||| |||||||||||||||||||||||| ||||||| |||||||||| ||||  | ||||||||||||    
T  31973501 gttg-gaaatcaagtgtgagtgattatgtctcacaccgactagaaatggaggaaccgttacatatataagagagg 31973428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 15327852 - 15327931
Alignment:
Q  123 gaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatat 202  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||| |||||    
T  15327852 gaaatcaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttagatatataagagaggggacccatat 15327931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 43834387 - 43834570
Alignment:
Q  20 tggtatcagagccctggttaggctcggtgggg-agagggagcgagattctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggg-gatt 117  Q
    |||||||||| |||||||||||| || ||||| || || || | ||| |||| |||||||| |||||| ||||| |||||| |||||||||| || ||||    
T  43834387 tggtatcagaaccctggttaggcccgatgggggagcggaagtgggatcctagtgtggatcaggctagtgatgtgagtgactcacacttgaggtggagatt 43834486  T
Q  118 ggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatat 202  Q
    | || |   | |||||||||||||||| |||||||||| ||| ||||||| |||| |||| | |||||||||||||||| |||||    
T  43834487 gttgggtt-tcaagtgtgagtgattatatctcacatcggctaagaatggatgaaatgttgaatatataagagaggggacccatat 43834570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 123 - 202
Target Start/End: Complemental strand, 4392354 - 4392275
Alignment:
Q  123 gaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatat 202  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||| ||||| |||||| ||||| ||| |||||    
T  4392354 gaaatcaagtgtgagtgattatgtctcacatcgactatgaatggaggaaacattggatatataacagaggagacccatat 4392275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 25 - 191
Target Start/End: Complemental strand, 4392163 - 4392004
Alignment:
Q  25 tcagagccctggttaggctcggtggggagagggagcgagattctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggg-gattggtgag 123  Q
    ||||||||| |||||||||||||||||||  ||||   ||| |||| |||||||| |||||| ||||||||        ||||||||   ||||| || |    
T  4392163 tcagagcccgggttaggctcggtggggagcaggagttggatcctagtgtggatcaggctagtgatgtgggt--------cttgagggaaagattgttggg 4392072  T
Q  124 aaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagag 191  Q
    |||| || ||| |||||||||||| |||||||| |||||||||||||||||||| | |||||||||||    
T  4392071 aaatcaactgtaagtgattatgtcccacatcgagtaggaatggaggaaacgttgaatatataagagag 4392004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 129 - 195
Target Start/End: Complemental strand, 25294943 - 25294877
Alignment:
Q  129 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagagggga 195  Q
    ||||||||||||||||||| ||||| | ||||||||||||||||| ||||| |||||||||||||||    
T  25294943 aagtgtgagtgattatgtcccacattggctaggaatggaggaaacattggatatataagagagggga 25294877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 20 - 186
Target Start/End: Complemental strand, 34666075 - 34665908
Alignment:
Q  20 tggtatcagagccctggttaggctcggtggggaga-gggagcgagattctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggg-gatt 117  Q
    ||||||||||| |||||||||||||| ||||| |  ||||||| ||| |||| ||||||||  ||||| ||||| || | | ||||||||||| | ||||    
T  34666075 tggtatcagagtcctggttaggctcgctggggtggtgggagcgggatcctagtgtggatcacactagtgatgtgagtaaatcacacttgagggagagatt 34665976  T
Q  118 ggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataa 186  Q
    | || ||||| | |||||||||||||| || |||||||||||| ||| ||||||| ||| || ||||||    
T  34665975 gttg-gaaatcatgtgtgagtgattatatcccacatcgactagaaattgaggaaatgttagatatataa 34665908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 124 - 191
Target Start/End: Complemental strand, 27686685 - 27686618
Alignment:
Q  124 aaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagag 191  Q
    |||| ||||||||||||||||||  ||||||||||||||||||||||||| || || |||||||||||    
T  27686685 aaattaagtgtgagtgattatgttccacatcgactaggaatggaggaaacattagatatataagagag 27686618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 5821728 - 5821800
Alignment:
Q  129 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcata 201  Q
    ||||||||||||||||||||||||||||    ||||||||||||| ||||| |||||||||||  ||||||||    
T  5821728 aagtgtgagtgattatgtctcacatcgatcgagaatggaggaaacattggatatataagagagaagactcata 5821800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 122 - 191
Target Start/End: Original strand, 12466278 - 12466347
Alignment:
Q  122 agaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagag 191  Q
    |||||| |||||| |||||||||||| |||||| ||||| ||||||| |||||||||| ||||| |||||    
T  12466278 agaaatcaagtgtaagtgattatgtcccacatcaactagaaatggagaaaacgttggatatatacgagag 12466347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 191
Target Start/End: Original strand, 6182374 - 6182436
Alignment:
Q  129 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagag 191  Q
    |||||||||||| ||||||| | || |||||||||||||| ||| |||||| ||||| |||||    
T  6182374 aagtgtgagtgactatgtcttatattgactaggaatggagaaaatgttggatatatatgagag 6182436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 26231809 - 26231738
Alignment:
Q  129 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatat 202  Q
    |||||| ||| |||||||| |||||||| ||||||| ||||||| |||  | |||||||||||||||| |||||    
T  26231809 aagtgtaagtaattatgtcccacatcgattaggaattgaggaaatgtt--atatataagagaggggacccatat 26231738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 123 - 201
Target Start/End: Complemental strand, 31973788 - 31973710
Alignment:
Q  123 gaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcata 201  Q
    ||||| ||||||| |||||||||||  | ||||||||  |||| ||||||| ||| | |||||||||||| ||||||||    
T  31973788 gaaatcaagtgtgcgtgattatgtccgatatcgactaaaaatgaaggaaacattgaaaatataagagaggagactcata 31973710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 64; Significance: 4e-28; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 202
Target Start/End: Original strand, 40053345 - 40053529
Alignment:
Q  20 tggtatcagagccctggttaggctcggtggggagagggagcgagattctagcgtggatcaagctagtaatgtgggtgactaacacttgagggggg---at 116  Q
    |||||||||||||||  ||||||||| ||||||| || || | ||| ||||| ||||||| |||||| |||||||||||| ||||||||||||||   ||    
T  40053345 tggtatcagagccctcattaggctcgatggggagcggaagtgggatcctagcctggatcaggctagtgatgtgggtgactcacacttgagggggggctat 40053444  T
Q  117 tggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatat 202  Q
    || || | ||| |||||||| | |||||||| ||||||| |||  ||||||||||| |||||| ||||||||||||| || |||||    
T  40053445 tgttg-ggaatcaagtgtgaataattatgtcccacatcggctaaaaatggaggaaatgttggatatataagagagggaacccatat 40053529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 73 - 202
Target Start/End: Original strand, 19548091 - 19548219
Alignment:
Q  73 tggatcaagctagtaatgtgggtgactaacacttgaggggggattggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaa 172  Q
    ||||||| |||||| |||||||||||| |||||||||| ||||||| || |   | ||| ||||||| ||||||| |||||||||||| ||| |||||||    
T  19548091 tggatcaggctagtgatgtgggtgactcacacttgaggagggattgttgggtt-tcaagcgtgagtggttatgtcccacatcgactagaaatagaggaaa 19548189  T
Q  173 cgttggacatataagagaggggactcatat 202  Q
     |||||| |||||||||||| ||| |||||    
T  19548190 tgttggatatataagagaggagacccatat 19548219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 123 - 201
Target Start/End: Original strand, 28226333 - 28226411
Alignment:
Q  123 gaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcata 201  Q
    ||||| ||||||||||| | ||||| |||||||||||| |||||||||||||||||| |||||||||||| ||| ||||    
T  28226333 gaaatcaagtgtgagtgttaatgtcccacatcgactagaaatggaggaaacgttggatatataagagaggagacccata 28226411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 35448777 - 35448708
Alignment:
Q  123 gaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagagg 192  Q
    ||||| |||||||  ||||||||||||||||||||||| ||| ||||||||||| || ||||||||||||    
T  35448777 gaaatcaagtgtgtatgattatgtctcacatcgactagaaatagaggaaacgtttgatatataagagagg 35448708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 192
Target Start/End: Complemental strand, 13792656 - 13792587
Alignment:
Q  123 gaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagagg 192  Q
    ||||| ||||||||||||||||||| |||||| ||||| |||||||||||  || || ||||||||||||    
T  13792656 gaaatcaagtgtgagtgattatgtcccacatcaactagaaatggaggaaatatttgatatataagagagg 13792587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 129 - 193
Target Start/End: Original strand, 19547871 - 19547935
Alignment:
Q  129 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggg 193  Q
    |||||||||| ||||||||| | ||||||||| |||||| |||| |||||| |||||||||||||    
T  19547871 aagtgtgagtaattatgtcttatatcgactagaaatggaagaaatgttggatatataagagaggg 19547935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 123 - 201
Target Start/End: Complemental strand, 30220043 - 30219965
Alignment:
Q  123 gaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcata 201  Q
    ||||| ||||||||| ||||||||| |||||||||||| | ||||||||| |||||| |  ||||||||| ||| ||||    
T  30220043 gaaatcaagtgtgagcgattatgtcccacatcgactagaactggaggaaatgttggatacttaagagaggagacccata 30219965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 136 - 191
Target Start/End: Complemental strand, 40801223 - 40801168
Alignment:
Q  136 agtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagag 191  Q
    ||||||||||||||||||||| ||| ||| ||| ||||||| || |||||||||||    
T  40801223 agtgattatgtctcacatcgattagaaattgagaaaacgtttgatatataagagag 40801168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 196
Target Start/End: Complemental strand, 11727864 - 11727735
Alignment:
Q  67 ctagcgtggatcaagctagtaatgtgggtgactaacacttgag-gggggattggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatg 165  Q
    |||| ||||||||  ||||| |||||||||||| ||||| ||| ||| ||||  ||| |||| |||||||||| |||||||   |||| |||||| ||||    
T  11727864 ctagtgtggatcagactagtgatgtgggtgactcacactcgagagggagattattga-aaattaagtgtgagtaattatgttctacattgactagaaatg 11727766  T
Q  166 gaggaaacgttggacatataagagaggggac 196  Q
    ||| ||||||| || ||| |||| |||||||    
T  11727765 gagaaaacgttagatataaaagataggggac 11727735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 190
Target Start/End: Complemental strand, 22062953 - 22062887
Alignment:
Q  124 aaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagaga 190  Q
    ||||||||||||| ||||||||||| ||||||||||  ||||||| | ||| | || ||||||||||    
T  22062953 aaataaagtgtgaatgattatgtcttacatcgactaaaaatggagcatacggtagatatataagaga 22062887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 35027905 - 35027978
Alignment:
Q  129 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatat 202  Q
    |||||| |||||||||||  |||||||| || ||||  |||||| |||||| |||||||||||| |||| ||||    
T  35027905 aagtgttagtgattatgttccacatcgattaagaataaaggaaatgttggatatataagagaggagacttatat 35027978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 59; Significance: 4e-25; HSPs: 16)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 20 - 172
Target Start/End: Complemental strand, 11776323 - 11776177
Alignment:
Q  20 tggtatcagagccctggttaggctcggtggggagagggagcgagattctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggg-gattg 118  Q
    |||||||||| ||||||||||||||||||||||| |||| |      ||||||||||||| |||||| |||||||||||| | ||||||||||| |||||    
T  11776323 tggtatcagaaccctggttaggctcggtggggagcgggatc------ctagcgtggatcaggctagtgatgtgggtgactcatacttgagggggagattg 11776230  T
Q  119 gtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaa 172  Q
     || ||  | |||||||| |||||||||| |||||| |||||||||||||||||    
T  11776229 ttgggat-tcaagtgtgaatgattatgtcccacatcaactaggaatggaggaaa 11776177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 67 - 190
Target Start/End: Original strand, 2463096 - 2463220
Alignment:
Q  67 ctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggg-gattggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatg 165  Q
    ||||||||||||| | |||| |||||||||||| |||||| ||| |  ||||| ||  |||| |||||||||||||||||||||||||||||||| ||      
T  2463096 ctagcgtggatcaggttagtgatgtgggtgactcacactttaggagaagattgttggaaaattaagtgtgagtgattatgtctcacatcgactagaaaat 2463195  T
Q  166 gaggaaacgttggacatataagaga 190  Q
    ||||||| |||||| ||||||||||    
T  2463196 gaggaaatgttggatatataagaga 2463220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 20 - 162
Target Start/End: Original strand, 8802385 - 8802528
Alignment:
Q  20 tggtatcagagccctggttaggctcggtggggagagggagcgagattctagcgtggatcaagctagtaatgtgggtgactaacacttgaggg-gggattg 118  Q
    ||||||||||||| ||||||||||| |||||||| ||||||| ||| ||||  ||||||| |||||| |||||| ||| | |||||||||||   |||||    
T  8802385 tggtatcagagccatggttaggctcagtggggagcgggagcgggatcctagtatggatcaggctagtgatgtggctgattcacacttgagggaaagattg 8802484  T
Q  119 gtgagaaataaagtgtgagtgattatgtctcacatcgactagga 162  Q
     || | |||  |||||||||||||||||| |||||||| |||||    
T  8802485 ttgggtaatctagtgtgagtgattatgtcccacatcgattagga 8802528  T

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Target: chr7; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 11776503 - 11776430
Alignment:
Q  129 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatat 202  Q
    ||||||||||||||||||| |||||| |||||||||||||||||| ||| | |||||||||||||||| |||||    
T  11776503 aagtgtgagtgattatgtcccacatcaactaggaatggaggaaacattgaatatataagagaggggacccatat 11776430  T

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Target: chr7; HSP #5
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 129 - 201
Target Start/End: Original strand, 48071388 - 48071460
Alignment:
Q  129 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcata 201  Q
    |||||| |||||||||||| |||||||||||||||||||||||||   ||| ||||||||||||| |||||||    
T  48071388 aagtgtcagtgattatgtcccacatcgactaggaatggaggaaacaaaggatatataagagagggaactcata 48071460  T

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Target: chr7; HSP #6
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 67 - 201
Target Start/End: Original strand, 27597925 - 27598059
Alignment:
Q  67 ctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggg-gattggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatg 165  Q
    |||| ||||||||  ||||| |||||||||| | |||||||| || | ||| | || ||||| ||||||||||||| |||||||||||||||||  |||     
T  27597925 ctagtgtggatcatcctagtgatgtgggtgagtcacacttgaaggagagatcgttg-gaaatcaagtgtgagtgataatgtctcacatcgactataaatt 27598023  T
Q  166 gaggaaacgttggacatataagagaggggactcata 201  Q
    ||| |||||||||| |||||||||||| ||| ||||    
T  27598024 gagcaaacgttggatatataagagaggagacccata 27598059  T

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Target: chr7; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 20 - 201
Target Start/End: Complemental strand, 21416406 - 21416225
Alignment:
Q  20 tggtatcagagccctggttaggctcggtgggg-agagggagcgagattctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggggattg 118  Q
    ||||||||||||| | |||||||| | ||||| || ||||||| ||| |||| ||||||||  ||||| |||||||||| | |||||| |||||| | |     
T  21416406 tggtatcagagcc-tagttaggcttgctgggggagtgggagcgggatcctagtgtggatcatcctagtgatgtgggtgagtcacacttcagggggaaatt 21416308  T
Q  119 gtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcata 201  Q
     | || ||| ||||||||||||||||||| |||||| |||||  |||||  |||  ||||| |||||||||||| ||| ||||    
T  21416307 tttaggaatcaagtgtgagtgattatgtcccacatcaactagacatggaacaaaaattggatatataagagaggagacccata 21416225  T

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Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 19 - 202
Target Start/End: Complemental strand, 23578271 - 23578087
Alignment:
Q  19 atggtatcagagccctggttaggctcggtgggg-agagggagcgagattctagcgtggatcaagctagtaatgtgggtgactaacacttgaggggg-gat 116  Q
    ||||||| ||||  || ||||||||| |||||| || ||||||| ||| |||||||| |||| |||||| || ||||| ||| | |||||||| || |||    
T  23578271 atggtataagagatctagttaggctcagtggggtagtgggagcgggatcctagcgtgaatcaggctagtgatatgggtcactcaaacttgaggcggagat 23578172  T
Q  117 tggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatat 202  Q
    || || |   | | ||||||||||||| ||| |||||||| ||| ||||||| |||||||||| |||||||||||| ||| |||||    
T  23578171 tgttgggtt-tcatgtgtgagtgattaagtcccacatcgagtagaaatggagaaaacgttggatatataagagaggtgacacatat 23578087  T

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Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 129 - 194
Target Start/End: Original strand, 22561956 - 22562021
Alignment:
Q  129 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagagggg 194  Q
    |||||||||||||||||||  | ||||| ||||||||||||||||||| || |||||| |||||||    
T  22561956 aagtgtgagtgattatgtcatatatcgaataggaatggaggaaacgttagatatataacagagggg 22562021  T

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Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 27938756 - 27938835
Alignment:
Q  123 gaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatat 202  Q
    |||||||||||||||||||||||||  |||||| ||   ||| |||||| ||||||| |||||||| ||| |||||||||    
T  27938756 gaaataaagtgtgagtgattatgtccgacatcggctgaaaattgaggaatcgttggatatataagaaaggagactcatat 27938835  T

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Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 124 - 202
Target Start/End: Original strand, 2463442 - 2463520
Alignment:
Q  124 aaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatat 202  Q
    |||| |||||||||| |||||||| ||||| |  ||| |||||||||||  ||||| |||||||||||||||| |||||    
T  2463442 aaatcaagtgtgagtaattatgtcccacattggttagaaatggaggaaatattggatatataagagaggggacacatat 2463520  T

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Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 132 - 190
Target Start/End: Original strand, 36675198 - 36675256
Alignment:
Q  132 tgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagaga 190  Q
    |||||||||| ||||| |||||||||||  ||||||| |||||||||| ||||||||||    
T  36675198 tgtgagtgataatgtcccacatcgactataaatggagaaaacgttggatatataagaga 36675256  T

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Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 202
Target Start/End: Original strand, 45100186 - 45100259
Alignment:
Q  129 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatat 202  Q
    ||||||||||||||||||  ||||| ||||||||||  || ||| |||| | |||||||||||  |||||||||    
T  45100186 aagtgtgagtgattatgttccacattgactaggaattaagaaaatgttgaatatataagagagatgactcatat 45100259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 73 - 188
Target Start/End: Original strand, 24903639 - 24903754
Alignment:
Q  73 tggatcaagctagtaatgtgggtgactaacacttgagggg-ggattggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaa 171  Q
    |||||||| ||| ||| |||||||||| |||||||| ||| |||||  ||| |||| |||||||||||  || ||  || ||||| ||| ||||||||||    
T  24903639 tggatcaatctactaacgtgggtgactcacacttgaagggaggattattga-aaatcaagtgtgagtgggtaggttccaaatcgattagaaatggaggaa 24903737  T
Q  172 acgttggacatataaga 188  Q
    | |||||| ||||||||    
T  24903738 atgttggatatataaga 24903754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 191
Target Start/End: Original strand, 27597696 - 27597763
Alignment:
Q  123 gaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagag 191  Q
    ||||| ||||||||||||| || |  |||||||| ||| ||||||| |||||||||| |||||||||||    
T  27597696 gaaattaagtgtgagtgat-atattccacatcgattagaaatggagcaaacgttggatatataagagag 27597763  T

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Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 123 - 191
Target Start/End: Complemental strand, 28445293 - 28445226
Alignment:
Q  123 gaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagag 191  Q
    ||||| || |||||||||| ||||| ||||||||||| |||||||| |||  ||||| |||||||||||    
T  28445293 gaaatcaactgtgagtgataatgtcccacatcgacta-gaatggagcaaatattggatatataagagag 28445226  T

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Target: scaffold0548 (Bit Score: 53; Significance: 1e-21; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 72 - 202
Target Start/End: Complemental strand, 4282 - 4151
Alignment:
Q  72 gtggatcaagctagtaatgtgggtgactaacacttgaggggg-gattggtgagaaataaagtgtgagtgattatgtctcacatcgactaggaatggagg- 169  Q
    ||||||||||||||| |||||| ||||| ||| ||||||||  ||||| | |||||| |||||||||||||| ||||||||||||||||  ||||||||     
T  4282 gtggatcaagctagtgatgtggatgactcacatttgaggggaagattg-tcagaaattaagtgtgagtgattgtgtctcacatcgactataaatggagga 4184  T
Q  170 aaacgttggacatataagagaggggactcatat 202  Q
    ||| |||||| |||| ||||||||||| |||||    
T  4183 aaatgttggatatatgagagaggggacacatat 4151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0256 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0256
Description:

Target: scaffold0256; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 202
Target Start/End: Original strand, 13365 - 13444
Alignment:
Q  123 gaaataaagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatat 202  Q
    ||||| |||||||| |||||| ||| |||||||||||| ||||||||||| ||| ||  || |||||||| ||| |||||    
T  13365 gaaatcaagtgtgaatgattaagtcacacatcgactagaaatggaggaaatgttagatttaaaagagaggtgacccatat 13444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0160 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: scaffold0160
Description:

Target: scaffold0160; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 129 - 202
Target Start/End: Complemental strand, 27604 - 27531
Alignment:
Q  129 aagtgtgagtgattatgtctcacatcgactaggaatggaggaaacgttggacatataagagaggggactcatat 202  Q
    ||||||||||||||||||   ||||||||||| |||||| ||||| ||| | | |||||||||| ||| |||||    
T  27604 aagtgtgagtgattatgttctacatcgactagaaatggaagaaacattgaatacataagagaggagacccatat 27531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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