View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21569_low_1 (Length: 638)
Name: NF21569_low_1
Description: NF21569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21569_low_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 558; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 558; E-Value: 0
Query Start/End: Original strand, 19 - 628
Target Start/End: Original strand, 7901866 - 7902475
Alignment:
| Q |
19 |
ccactgtctacggggcaatagtaattatgcctaaacttggaacaccgtttcctttcccacagccagctagagaattcgaaattgtcttaggtaagtatta |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7901866 |
ccactgtctacggggcaatagtaattatgcctaaacttggaacaccatttcctttcccacagccagctagagaattcgaaattgtcttaggtaagtatta |
7901965 |
T |
|
| Q |
119 |
taaagattcatttttccnnnnnnnngtattataaagattcatcggatgaaataagaagtatgaaagttgatgtactaattgtttctgcatccaataggtg |
218 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
7901966 |
taaagattcatttttccaaaaaaaagtattataaagattcatgggatgaaataagaagtatgaaagttgatgtactaattgtttctgcatgcaataggtg |
7902065 |
T |
|
| Q |
219 |
aatggtggaacaatgatgtggaagagattgaaaagcaaggaaacaaattggggttgccaccaaatgtgtcagatgcacatacgatcaatggaaaaccagg |
318 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
7902066 |
aatggtggaacaatgatgtggaagagattgaaaagcaagggaacaaattggggttgccaccaaatatgtcagatgcacatacgatcaatggaaaaccagg |
7902165 |
T |
|
| Q |
319 |
accactatttccttgttctgagaagcgtaagaaaaattagtcgagcacagttttaaatagactatgctataccgtagatctaattaacaggctgaataca |
418 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7902166 |
accactatttccttgttctgagaagcgtaagaaaaattagtcgagcacagttttaaatagactatgctataccgtagatctaattaacaggctgaataca |
7902265 |
T |
|
| Q |
419 |
atttgtacaaatacaaaatatttaattatatttacaagagaataaaatctttatttgaagttcaattaatttgcttcaattttctagacacatttgcaat |
518 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7902266 |
atttgtacaaatacaaaatatttaattatagttacaagagaataaattctttatttgaagttcaattaatttgcttcaattttctagacacatttgcaat |
7902365 |
T |
|
| Q |
519 |
ggaggtagaacaagggaagacatacctcatgagaatcgtcaacgctgccctcaacgatgagcttttctttgccattgcgggtcacaacatgacagtagtg |
618 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7902366 |
ggaggtagaacaagggaagacatacctcatgagaatcgtcaacgctgccctcaacgatgagcttttctttgccattgcgggtcacaacatgacagtagtg |
7902465 |
T |
|
| Q |
619 |
gaggttgatg |
628 |
Q |
| |
|
|||||||||| |
|
|
| T |
7902466 |
gaggttgatg |
7902475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 218 - 351
Target Start/End: Original strand, 7891747 - 7891880
Alignment:
| Q |
218 |
gaatggtggaacaatgatgtggaagagattgaaaagcaaggaaacaaattggggttgccaccaaatgtgtcagatgcacatacgatcaatggaaaaccag |
317 |
Q |
| |
|
||||||||| |||| |||||||||||||| | ||| ||||| ||| || ||||||||||||||||| |||| |||||||||||||||||||| || |||| |
|
|
| T |
7891747 |
gaatggtggcacaaagatgtggaagagatagtaaaccaagggaaccaaatggggttgccaccaaatatgtcggatgcacatacgatcaatgggaagccag |
7891846 |
T |
|
| Q |
318 |
gaccactatttccttgttctgagaagcgtaagaa |
351 |
Q |
| |
|
||||||| ||||||||||| ||||| |||||||| |
|
|
| T |
7891847 |
gaccactctttccttgttccgagaaacgtaagaa |
7891880 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 498 - 628
Target Start/End: Original strand, 7892072 - 7892202
Alignment:
| Q |
498 |
ttttctagacacatttgcaatggaggtagaacaagggaagacatacctcatgagaatcgtcaacgctgccctcaacgatgagcttttctttgccattgcg |
597 |
Q |
| |
|
||||||||| |||| |||||||||||| || | || |||||||| || | |||||| |||| || ||||| || ||||||||||||||| || |||| |
|
|
| T |
7892072 |
ttttctagatacatatgcaatggaggttgagaagggcaagacatatctgctaagaatcatcaatgcagcccttaatgatgagcttttcttttcccttgct |
7892171 |
T |
|
| Q |
598 |
ggtcacaacatgacagtagtggaggttgatg |
628 |
Q |
| |
|
|||||||||||||||||||| || ||||||| |
|
|
| T |
7892172 |
ggtcacaacatgacagtagttgaagttgatg |
7892202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 45 - 103
Target Start/End: Original strand, 7891486 - 7891544
Alignment:
| Q |
45 |
atgcctaaacttggaacaccgtttcctttcccacagccagctagagaattcgaaattgt |
103 |
Q |
| |
|
|||||||||| ||||| || |||||||| ||||| |||||||||||||| |||||||| |
|
|
| T |
7891486 |
atgcctaaaccaggaaccccttttccttttccacaaccagctagagaatttgaaattgt |
7891544 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 19 - 339
Target Start/End: Original strand, 31213846 - 31214165
Alignment:
| Q |
19 |
ccactgtctacggggcaatagtaattatgcctaaacttggaacaccgtttcctttcccacagccagctagagaattcgaaattgtcttaggtaagtatta |
118 |
Q |
| |
|
|||||||||| |||||||||||||| |||||||||||||||| ||| ||||||||||||||||||||||||||| || |||||||||||||||||||||| |
|
|
| T |
31213846 |
ccactgtctatggggcaatagtaatcatgcctaaacttggaatacc-tttcctttcccacagccagctagagaagtcaaaattgtcttaggtaagtatta |
31213944 |
T |
|
| Q |
119 |
taaagattcatttttccnnnnnnnn----gtattataaagattcatcggatgaaataagaagtatgaaagttgatgtactaattgtttctgcatccaata |
214 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
31213945 |
taaagattcatttttccaaaaaaaaaaaagtattataaagattcatcgga----ataagaagtatgaaagttgatatactaattgtttctgcatgcaata |
31214040 |
T |
|
| Q |
215 |
ggtgaatggtggaacaatgatgtggaagagattgaaaagcaaggaaacaaattggggttgccaccaaatgtgtcagatgcacatacgatcaatggaaaac |
314 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
31214041 |
ggtgaatggtggaacaatgatgtggaagagattgaaaatcaaggaaacaatatggggttgtcaccaaatatgtcagatgcacatacgatcaatggaaaac |
31214140 |
T |
|
| Q |
315 |
caggaccactatttccttgttctga |
339 |
Q |
| |
|
||||||| ||||||||||||||||| |
|
|
| T |
31214141 |
caggaccgctatttccttgttctga |
31214165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University