View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21569_low_3 (Length: 433)
Name: NF21569_low_3
Description: NF21569
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21569_low_3 |
 | |
|
| [»] chr2 (3 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 385; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 385; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Original strand, 32313028 - 32313441
Alignment:
| Q |
18 |
tttattgctatgctgcatagtctatactctgttagttgtttttgaaatgttttcatctgcaaattgattagagtgtgattagtaatggccctattcccca |
117 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32313028 |
tttattgctatgctgcatagtctatactttgttagttgtttttgaaatgttttcatctgcaaattgattagagtgtgattagtaatggccctattcccca |
32313127 |
T |
|
| Q |
118 |
ttatgcttcacaaccttctcatgcttgttctattatgtgatcatttcatggtcaaaccaataaaaactttatgcactttttaatataaagtatatgaatt |
217 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
32313128 |
ttatgcttcacaaccttctcatgcttggtctattatgtgatcatttcatggtcaaaccaataaaaactttatgcactttttaatataaagtata--aatt |
32313225 |
T |
|
| Q |
218 |
gctttaacttaaaatttaaaatttaaattgtatgtaacaatgcaagccttttcattccattttggttatttattttagtgactactataaaccttttttc |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32313226 |
gctttaacttaaaatttaaaatttaaattgtatgtaacaatgcaagccttttaatttcattttggttatttattttagtgactactataaaccttttttc |
32313325 |
T |
|
| Q |
318 |
cctgtgttctattcttcttgcccaatttaacgttgaagggtatatttggagttgatgatacctttgaagtcaactagtttgagctacgattattcaactc |
417 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
32313326 |
cctgtgttctattcttcttgcccaatttaacgttgaagggtatattaggagttgatgatacctttgaagtcaactagtttgagctacgattattcaactc |
32313425 |
T |
|
| Q |
418 |
taatccataaatgcat |
433 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
32313426 |
taatccataaatgcat |
32313441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 121; E-Value: 8e-62
Query Start/End: Original strand, 135 - 413
Target Start/End: Complemental strand, 39365098 - 39364813
Alignment:
| Q |
135 |
ctcatgcttgttctattatgtgatcatttcatggtcaaaccaataaaaa-----ctttatgcactttttaat-ataaagtat----atgaattgctttaa |
224 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||| |||| |||||||||| || || |||||| |||||||||||||| |
|
|
| T |
39365098 |
ctcatgcttgttctatcatgtgatcatttcatggtcaaaccaataaaaaaaaaactttgtgcacttttttattatgaagtatgaatatgaattgctttaa |
39364999 |
T |
|
| Q |
225 |
cttaaaatttaaaatttaaattgtatgtaacaatgcaagccttttcattccattttggttatttattttagtgactactata------aaccttttttcc |
318 |
Q |
| |
|
||||||| |||||||||||||||| |||||||| ||||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
39364998 |
-------tttaaaacttaaattgtatgtaacgatgcaagctttttcattccattttagttatttattttagtgactactatatatataaaccttttttct |
39364906 |
T |
|
| Q |
319 |
ctgtgttctattcttcttgcccaatttaacgttgaagggtatatttggagttgatgatacctttgaagtcaactagtttgagctacgattattca |
413 |
Q |
| |
|
|| |||||||||||||| ||||||||||| |||||| ||||||| |||||||||||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
39364905 |
-tgagttctattcttcttccccaatttaaccttgaagtgtatatt-ggagttgatgatacctttgaagtcaactagtttgaggaaggattattca |
39364813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 86
Target Start/End: Complemental strand, 32788123 - 32788087
Alignment:
| Q |
50 |
tagttgtttttgaaatgttttcatctgcaaattgatt |
86 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
32788123 |
tagttgttttttaaatgttttcatctgcaaattgatt |
32788087 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University