View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2156_low_6 (Length: 244)
Name: NF2156_low_6
Description: NF2156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2156_low_6 |
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Alignment Details
Target: chr4 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 16 - 236
Target Start/End: Complemental strand, 37697772 - 37697552
Alignment:
| Q |
16 |
accaaactctcttcatgggatccaaacaacaatgattgctgcaacgacaaatggaagggtgtctcatgcgactcagaccgagtcgccaaccttggtctcg |
115 |
Q |
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| T |
37697772 |
accaaactctcttcatgggatccaaacaacaatgactgctgcaacgacaaatggaagggtgtctcatgcgactcagaccgagtcgccaaccttggtctcg |
37697673 |
T |
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| Q |
116 |
acgacctcaacctccctaaacctgttccatttccaccctccatcactaacctccctttccttgacgacttctctctctcccgcatccccaacctcgtcgg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
37697672 |
acgacctcaacctccctaaacctgttccatttccaccctccatcactaacctcccttttcttgacgatttctctctctcccgcatccccaacctcgtcgg |
37697573 |
T |
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| Q |
216 |
cactatcccaccgttcatctc |
236 |
Q |
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|||||||||||||| |||||| |
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| T |
37697572 |
cactatcccaccgtccatctc |
37697552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 20 - 223
Target Start/End: Original strand, 38013313 - 38013525
Alignment:
| Q |
20 |
aactctcttcatgggatccaaacaacaatgattgctgcaacgacaaatggaagggtgtctcatgcgactcagac------------cgagtcgccaacct |
107 |
Q |
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|||||||||||||||||||||||| || || ||||||||| |||||||||| |||||||||||| |||||||| ||||| | ||||| |
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| T |
38013313 |
aactctcttcatgggatccaaaca-ca--gactgctgcaacaacaaatggaaaggtgtctcatgcaactcagacacacaaaccaaccgagtagaaaacct |
38013409 |
T |
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| Q |
108 |
tggtctcgacgacctcaacctccctaaacctgttccatttccaccctccatcactaacctccctttccttgacgacttctctctctcccgcatccccaac |
207 |
Q |
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|| |||||| |||| |||| ||||||||||||||| |||||||||||||| ||||||||||||||||| | |||||||||||| |||||||||| |
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| T |
38013410 |
tgatctcgagaaccttgacctacctaaacctgttccaattccaccctccatcgctaacctccctttccttaccttactctctctctcccacatccccaac |
38013509 |
T |
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| Q |
208 |
ctcgtcggcactatcc |
223 |
Q |
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|| ||||||||||||| |
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| T |
38013510 |
cttgtcggcactatcc |
38013525 |
T |
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