View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2156_low_7 (Length: 240)
Name: NF2156_low_7
Description: NF2156
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2156_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 196; Significance: 1e-107; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 14 - 221
Target Start/End: Complemental strand, 9669760 - 9669553
Alignment:
| Q |
14 |
gatgaagttctgttcctttctcaaatccaaagaagggtctaaattcctcgatgattttcagaagaaagccgagttatggaatgtgatgaagaggcggatg |
113 |
Q |
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| T |
9669760 |
gatgaagttctgttcctttctcaaatccaaagaagggtctcaaatcctcgatgattttcagaagaaagccgagttatggaatgtgatgaagaggcggatg |
9669661 |
T |
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| Q |
114 |
gcagagattgaagcagttatcgcttaccactgtggtcagattgtgttgctggagaaaaagctggagaatgagatagctgaggttgaaagttgttatctcc |
213 |
Q |
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| T |
9669660 |
gcagagattgaagcagttatcgcttaccaccgtggtcagattgtgttgctggagaaaaagctggagaatgagatagctgaggttgaaagttgttatctcc |
9669561 |
T |
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| Q |
214 |
cagcttct |
221 |
Q |
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|||||||| |
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| T |
9669560 |
cagcttct |
9669553 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 9689052 - 9688984
Alignment:
| Q |
14 |
gatgaagttctgttcctttctcaaatccaaagaagggtctaaattcctcgatgattttcagaagaaagc |
82 |
Q |
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| T |
9689052 |
gatgaagttatgtaacttcctcaaatccaaagaagggtctcaaatcctcgatgatattcagaagaaagc |
9688984 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 9685030 - 9684957
Alignment:
| Q |
148 |
gtcagattgtgttgctggagaaaaagctggagaatgagatagctgaggttgaaagttgttatctcccagcttct |
221 |
Q |
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| T |
9685030 |
gtcagattgtgttgctggagagaaaactggagaccgagatagttgaggtcaagagatgttatgtcccagcttct |
9684957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 14 - 82
Target Start/End: Complemental strand, 9685245 - 9685177
Alignment:
| Q |
14 |
gatgaagttctgttcctttctcaaatccaaagaagggtctaaattcctcgatgattttcagaagaaagc |
82 |
Q |
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||||||||||||| ||| ||||||||||| |||||||||||| |||| | || |||||| |||||||| |
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| T |
9685245 |
gatgaagttctgtgacttcctcaaatccaatgaagggtctaaaatcctagctggttttcacaagaaagc |
9685177 |
T |
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