View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21570_high_1 (Length: 680)

Name: NF21570_high_1
Description: NF21570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21570_high_1
NF21570_high_1
[»] chr3 (1 HSPs)
chr3 (20-666)||(46809996-46810642)


Alignment Details
Target: chr3 (Bit Score: 611; Significance: 0; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 611; E-Value: 0
Query Start/End: Original strand, 20 - 666
Target Start/End: Complemental strand, 46810642 - 46809996
Alignment:
Q  20 cttacgcctctatgcattttgactcctaagttcatcttaaaatgccagtgttagtttctcttttcaagttattgtaacgttaaggttaaccttttcagcc 119  Q
    ||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46810642 cttacgcctctctgtattttgactcctaagttcatcttaaaatgccagtgttagtttctcttttcaagttattgtaacgttaaggttaaccttttcagcc 46810543  T
Q  120 tgcctggagattttgggttcgacccacttggactaggagaggatcctgaaagcttaaagtggtatgtgcaagcagagttggttcattctcgctttgcgat 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  46810542 tgcctggagattttgggttcgacccacttggactaggagaggatcctgaaagcttaaagtggtatgtgcaagcagagttggttcattctcgctttgcaat 46810443  T
Q  220 gcttggggtcttgggaattttagtcacagatgtgagtcacacaactcttaacataatttttcacatttcataattccagtaacgttttttatattgaaag 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46810442 gcttggggtcttgggaattttagtcacagatgtgagtcacacaactcttaacataatttttcacatttcataattccagtaacgttttttatattgaaag 46810343  T
Q  320 aagctttactattaaaacacatgcgccacatatatattatcaaagttttgaataaaggcctgcaaagctactacgatctaaactgcaacataatggtttt 419  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46810342 aagctttactattaaaacacatgcgccacatatatattatcaaagttttgaataaaggcctgcaaagctactacgatctaaactgcaacataatggtttt 46810243  T
Q  420 taatgttgtcgaagccacaatgtgactgcgattgaggttggatcggccatgtttggccacgattctctatcaaggatagcgagacagctgtgactgtatc 519  Q
    | ||||||||||| ||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46810242 tgatgttgtcgaaaccacaatgtgactgcgactgaggttggatcggccaagtttggccacgattctctatcaaggatagcgagacagctgtgactgtatc 46810143  T
Q  520 acaaccactatttataatcatatatacgacgggcatttcatcctaaacttgttatcaatctatgcagctacttcgtatcgcaggagttaatagcatacca 619  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||    
T  46810142 acaaccgctatttataatcatatatacgacgggcatttcatcctaaacttgttatcaatctatgcagctacttcgtgtcgcaggagttaatagcatacca 46810043  T
Q  620 atttggtttgaagctggtgcagtaaaatacgagtttgccaacacagg 666  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  46810042 atttggtttgaagctggtgcagtaaaatacgagtttgccaacacagg 46809996  T

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