View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21570_high_10 (Length: 276)
Name: NF21570_high_10
Description: NF21570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21570_high_10 |
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| [»] scaffold0777 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 183; Significance: 5e-99; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 51 - 261
Target Start/End: Original strand, 34685713 - 34685918
Alignment:
| Q |
51 |
gtttgtttctaatgtgtccagttttatacatttgtattctagctagtatccgttttataaaacctagtacttatctctaataatcatctctatcttttta |
150 |
Q |
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| T |
34685713 |
gtttgtttctaatgtgtccagttttatacatttgtattctagtt-----ccgttttataaaacctagtacttatctctaataatcatctctatcttttga |
34685807 |
T |
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| Q |
151 |
tatttaggttaagttcaataatttcccttactttctctatctatcgcagcatatcaacgatcgatcagtgatggctcccaggaagaaagtacattggcca |
250 |
Q |
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| T |
34685808 |
tatttaggttaagttcaataatttcccttactttctctatctatcgcagcatatcaacgatcgatcagtgatggctcccaggaagaaagtacattggcca |
34685907 |
T |
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| Q |
251 |
agcaggttcat |
261 |
Q |
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| T |
34685908 |
agcaggttcat |
34685918 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 124 - 260
Target Start/End: Original strand, 34693574 - 34693711
Alignment:
| Q |
124 |
tctctaataatcatctctatctttttatatttaggtt-aagttcaataatttcccttactttctctatctatcgcagcatatcaacgatcgatcagtgat |
222 |
Q |
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| T |
34693574 |
tctctaataatcatctatatctttcaatattcaggttcaagttcaataattcgtcttaatttctccatctatcccagcatatcaacaatcgatcagtgat |
34693673 |
T |
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| Q |
223 |
ggctcccaggaagaaagtacattggccaagcaggttca |
260 |
Q |
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| T |
34693674 |
ggctcccttcaagaaagtacattggtcaaacaagttca |
34693711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0777 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0777
Description:
Target: scaffold0777; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 74 - 160
Target Start/End: Original strand, 5509 - 5595
Alignment:
| Q |
74 |
ttatacatttgtattctagctagtatccgttttataaaacctagtacttatctctaataatcatctctatctttttatatttaggtt |
160 |
Q |
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| T |
5509 |
ttataaatttgtattctagttagtatcctctttataaattctagtacttctctctactaatcttctcaatcttttgatatttaggtt |
5595 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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