View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21570_high_11 (Length: 272)
Name: NF21570_high_11
Description: NF21570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21570_high_11 |
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Alignment Details
Target: chr2 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 1 - 264
Target Start/End: Original strand, 3700877 - 3701140
Alignment:
| Q |
1 |
ttaacatcaatgctacaagaaaataacttcaagacacaataaaagtaggaaataatagtattgttaggaagtgaaatctcaacaaatccttaaaggaata |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3700877 |
ttaacatcaatgctacaagaaaataacttcaagacacaataaaagtaggaaataatagtattgttaggaagtgaaatctcaacaaatccttaaaggaata |
3700976 |
T |
|
| Q |
101 |
ttccaaataaataaggattcaagaagatccttacctttccaagctagtagaaacattaaacaccagagtccgtatgtattgcaatcaacaacggatgagt |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3700977 |
ttccaaataaataaggattcaagaagatccttacctttccaagctagtagaaacattaaacaccagagtccgtatgtattgcaatcaacaacggatgagt |
3701076 |
T |
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| Q |
201 |
cgatactgacttcagaggatattctgtatataatacaaaatgtgtctgattgatacctatgctt |
264 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3701077 |
cgataccaacttcagaggatattctgtatataatacaaaatgtgtctgattgatacctatgctt |
3701140 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 196; Significance: 1e-107; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 196; E-Value: 1e-107
Query Start/End: Original strand, 1 - 264
Target Start/End: Complemental strand, 6602667 - 6602405
Alignment:
| Q |
1 |
ttaacatcaatgctacaagaaaataacttcaagacacaataaaagtaggaaataatagtattgttaggaagtgaaatctcaacaaatccttaaaggaata |
100 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||||||| |||||||||| |
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| T |
6602667 |
ttaacatcagtgctacaagaaaataacttcaagacacaataaaagtaggaaattatagtattgttcggaagcaaaatctcaacaaatccgtaaaggaata |
6602568 |
T |
|
| Q |
101 |
ttccaaataaataaggattcaagaagatccttacctttccaagctagtagaaacattaaacaccagagtccgtatgtattgcaatcaacaacggatgagt |
200 |
Q |
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|| |||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6602567 |
ttaacgataaataaggattcaagaagatatttacctttccaagctaatagaaacattaaacaccagagtccgtatgtattgcaatcaacaacggatgagt |
6602468 |
T |
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| Q |
201 |
cgatactgacttcagaggatattctgtatataatacaaaatgtgtctgattgatacctatgctt |
264 |
Q |
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||||||||||||||||||||||| |||||| |||||||||||||||| |||||||||||||||| |
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| T |
6602467 |
cgatactgacttcagaggatatt-tgtatacaatacaaaatgtgtctaattgatacctatgctt |
6602405 |
T |
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