View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21570_high_14 (Length: 238)
Name: NF21570_high_14
Description: NF21570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21570_high_14 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 41 - 221
Target Start/End: Original strand, 2794401 - 2794581
Alignment:
| Q |
41 |
atgcattatttttccatcttgttattaaaatttcctatgacttctgctttttaacttgtgtttttgaacagactgttgagaaggctatgacacctattga |
140 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2794401 |
atgctttatgtttccatcttgttattaaaatttcttatgacttctgctttttaacttgtgtttttgaacagactgttgagaaggctatgacacctattga |
2794500 |
T |
|
| Q |
141 |
atcaacattttcattagatgtaaattcaaaattggactggtaatctttcttaatatctttgtcattattttcagtagatta |
221 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2794501 |
atcaacattttcattagatgtaaattcaaaattggactggtaatctttcttaatatctttgtcattattttcagtagatta |
2794581 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 44 - 209
Target Start/End: Original strand, 48669526 - 48669685
Alignment:
| Q |
44 |
cattatttttccatcttgttattaaaatttcctatgacttctgctttttaacttgtgtttttgaacagactgttgagaaggctatgacacctattgaatc |
143 |
Q |
| |
|
||||| ||||||||||||||||| ||||||||| | ||||| || | |||||||||||| ||||||| |||| |||||||||| ||||||||||| |
|
|
| T |
48669526 |
cattacttttccatcttgttatttaaatttccttt------tgcttattcatttgtgtttttgagcagactgctgaggaggctatgactcctattgaatc |
48669619 |
T |
|
| Q |
144 |
aacattttcattagatgtaaattcaaaattggactggtaatctttcttaatatctttgtcattatt |
209 |
Q |
| |
|
||||||||| |||||||| ||||||||||||||||||||| |||||||| | |||||||| ||||| |
|
|
| T |
48669620 |
aacattttctttagatgttaattcaaaattggactggtaagctttcttagtttctttgtcgttatt |
48669685 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 65; Significance: 1e-28; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 96 - 192
Target Start/End: Original strand, 16390272 - 16390368
Alignment:
| Q |
96 |
ttgtgtttttgaacagactgttgagaaggctatgacacctattgaatcaacattttcattagatgtaaattcaaaattggactggtaatctttctta |
192 |
Q |
| |
|
|||||||||||||||||||| |||| |||||||||| ||||| |||||||||||||| |||||||| |||||||| |||||||||||| |||||||| |
|
|
| T |
16390272 |
ttgtgtttttgaacagactgctgaggaggctatgactcctatcgaatcaacattttctttagatgttaattcaaagttggactggtaagctttctta |
16390368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University