View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21570_high_16 (Length: 215)
Name: NF21570_high_16
Description: NF21570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21570_high_16 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 162; Significance: 1e-86; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 37 - 198
Target Start/End: Original strand, 28292418 - 28292579
Alignment:
| Q |
37 |
tttatgtttaaatagcacaactctaattattctaacggtagtataaacattttgatatttgtcaggaccagcgagatgttaccggcaaattaagaacaaa |
136 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28292418 |
tttatgtttaaatagcacaactctaattattctaacggtagtataaacattttgatatttgtcaggaccagcgagatgttaccggcaaattaagaacaaa |
28292517 |
T |
|
| Q |
137 |
ccataccctaagtcacgattctgtcgcggtgtaccagatccaaagatccgaatctatgatgt |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28292518 |
ccataccctaagtcacgattctgtcgcggtgtaccagatccaaagatccgaatctatgatgt |
28292579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 184
Target Start/End: Original strand, 43069818 - 43069902
Alignment:
| Q |
100 |
aggaccagcgagatgttaccggcaaattaagaacaaaccataccctaagtcacgattctgtcgcggtgtaccagatccaaagatc |
184 |
Q |
| |
|
|||||| || || |||||||| |||||||||||||| ||||| || ||||| || |||||||| ||||| || ||||| |||||| |
|
|
| T |
43069818 |
aggacctgcaaggtgttaccgtcaaattaagaacaagccatatccaaagtcccgtttctgtcgtggtgttcctgatcccaagatc |
43069902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 100 - 198
Target Start/End: Complemental strand, 39035578 - 39035480
Alignment:
| Q |
100 |
aggaccagcgagatgttaccggcaaattaagaacaaaccataccctaagtcacgattctgtcgcggtgtaccagatccaaagatccgaatctatgatgt |
198 |
Q |
| |
|
|||||| || || |||||||| |||||||||||||| ||||| || || |||||||||||||| || || || ||||| |||||| | || |||||||| |
|
|
| T |
39035578 |
aggacctgctaggtgttaccgtcaaattaagaacaagccatatccaaaatcacgattctgtcgtggagttcctgatccgaagatcaggatttatgatgt |
39035480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University