View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21570_high_2 (Length: 518)
Name: NF21570_high_2
Description: NF21570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21570_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 206; Significance: 1e-112; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 20 - 341
Target Start/End: Complemental strand, 29439872 - 29439552
Alignment:
| Q |
20 |
cctatgagaagtattgatttatattatgataatgtgtatttgacatcatgttttcatatacatttaacattacaaaatgataaatttttccactatgaac |
119 |
Q |
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| T |
29439872 |
cctatgaaaagtattgatttgtattatgataatgtgtatttgacatcatgttttcagatacatttaacattcaaaaataataaatttttctactatgaac |
29439773 |
T |
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| Q |
120 |
aagttgattttttgctcattagattaaataagaaagacactcataccatagtgtttcaacactagattttaacccacaacatattccactattgttttct |
219 |
Q |
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| T |
29439772 |
aagttgattttt-gttgatgagatcaaataaaaaacacactcttaccttagtgtttcaacactatattttatcccacaacatattccactattgttttct |
29439674 |
T |
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| Q |
220 |
cttccaagcctcactcgccaactcacccaccaccaccaacgccaataacataaaaaccttagaatcttaacctaatcttcattctagttttgtttcatat |
319 |
Q |
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| T |
29439673 |
cttcccagcctcactcacacactcacccaccattaccaacgccaataacataaaaaccttagaatcttaacttaatcttcattctaattttgtttcatat |
29439574 |
T |
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| Q |
320 |
agatactcaaacagacaaaaaa |
341 |
Q |
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| T |
29439573 |
agatacacaaacaggcaaaaaa |
29439552 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 340 - 443
Target Start/End: Complemental strand, 29438883 - 29438780
Alignment:
| Q |
340 |
aatgcagccatatgcaattctagaatctcctgaagactccattccacgatgaaaatcctacaagattgctccaatttcatacgccctctcttgtgcttga |
439 |
Q |
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| T |
29438883 |
aatgcagccacatgcagttctagaatcgcctcaagactccatttcacagtgaaaatcctacaagattgctccaatttcatacgctctctattgtgcttga |
29438784 |
T |
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| Q |
440 |
aggc |
443 |
Q |
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|||| |
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| T |
29438783 |
aggc |
29438780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 445 - 502
Target Start/End: Complemental strand, 29436157 - 29436100
Alignment:
| Q |
445 |
acatgaacaccgttttttctcaagctcatggagaacgcaacgtcaccgtactctctct |
502 |
Q |
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|||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
29436157 |
acatgaacaccgttctttctcaggctcatggagaacgcaacgtcaccgtactctctct |
29436100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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