View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21570_high_3 (Length: 441)
Name: NF21570_high_3
Description: NF21570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21570_high_3 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 12 - 426
Target Start/End: Complemental strand, 15139870 - 15139456
Alignment:
| Q |
12 |
tcatcagaattagagttgcatgtaagatactcggaagctgcaatatcattctgcagttcacctgatagaaacaaaagaatgcatgtgtattaagcaattt |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15139870 |
tcatcagaattagagttgcatgtaagatactcggaagctgcaatatcattctgcagttcacctgatagaaacaaaagaatgcatgtgtattaagcaattt |
15139771 |
T |
|
| Q |
112 |
tgtacatcaataccatagaaattgtttaggtaacttattcaaaataaaatatagaaaagtgtaaaaagagttattaccaggtgtattgctgcattggttt |
211 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
15139770 |
tgtacatcaataccatagaaattgtttaggtaacttattcacaataaaatatagaaaagtgtaaaaagagttattaccagctgtattgctgcattggttt |
15139671 |
T |
|
| Q |
212 |
tcaggataaaagtaaaaggacttgtttgagttttcagcacagggaaaatcttctagtatcgaatccctgcattatgtaaaacatatgaagactgtaagat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15139670 |
tcaggataaaagtaaaaggacttgtttgagttttcagcacagggaaaatcttctagtatcgaatccctgcattatgtaaaacatatgaagactgtaagat |
15139571 |
T |
|
| Q |
312 |
aacgcagtcatatcatataaattgaattaatttcatgcctatggtagccagtgagaattgaatgtctctgttaagtatatttttgtatgcaatatttaaa |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15139570 |
aacgcagtcatatcatataaattgaattaatttcatgcctatggtagccagtgagaattgaatgtctctgttaagtatatttttgtatgcaatatttaaa |
15139471 |
T |
|
| Q |
412 |
atataagatcatttt |
426 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
15139470 |
atataagatcatttt |
15139456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University