View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21570_high_8 (Length: 303)
Name: NF21570_high_8
Description: NF21570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21570_high_8 |
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Alignment Details
Target: chr3 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 19 - 273
Target Start/End: Original strand, 28292161 - 28292416
Alignment:
| Q |
19 |
acaccaacctctaatctttttaattccaattttcagtttcaacacaaaaaatcaacaatgggaagaagtaagcaactaaacaacctctctctttctttta |
118 |
Q |
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| T |
28292161 |
acaccaacctctcatctttttaattccaattttcagtttcaacacaaaaaatcaacaatgggaagaagtaagcaactaaacaacctctctcttcctttta |
28292260 |
T |
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| Q |
119 |
ttctctcaaagttttctcattagttcaaaatcttcaaataaatttcatatt-aactaatccataattatattttgacaacgaaattttaatgtcaaacac |
217 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
28292261 |
ttctctccaagttttctcattagttcaaaatcttcaaataaattttatattaaactaatccataattatattttgacaacggaattttaatgtcaaacac |
28292360 |
T |
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| Q |
218 |
ggtgtcttattgattttgtatttannnnnnnataaatatatacgatgtcacataat |
273 |
Q |
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|||||| |||||||||||| | || ||||||||||||||||||||||||| |
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| T |
28292361 |
ggtgtcctattgattttgtgtgtatttttttataaatatatacgatgtcacataat |
28292416 |
T |
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