View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21570_high_9 (Length: 277)
Name: NF21570_high_9
Description: NF21570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21570_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 104; Significance: 7e-52; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 79 - 202
Target Start/End: Original strand, 12210709 - 12210832
Alignment:
| Q |
79 |
tgtgtttttgggatttaggtttttagctgtttctcagtaaaacagatatcgaaaacaagattaagagaaaaggtcgaatataaattaagaagattcatga |
178 |
Q |
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| T |
12210709 |
tgtgtttttgggatttagggttttagctatttctcagtaaaacagatatcgaaaacatgattaagagaagaggtcgaatataaattaagaagattcatga |
12210808 |
T |
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| Q |
179 |
gaagtaagcacaacatggaaggaa |
202 |
Q |
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| T |
12210809 |
gaagcaagcacaacatggaaggaa |
12210832 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 154 - 202
Target Start/End: Complemental strand, 31689465 - 31689417
Alignment:
| Q |
154 |
gaatataaattaagaagattcatgagaagtaagcacaacatggaaggaa |
202 |
Q |
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| T |
31689465 |
gaatataaattaagaagattcatgagaatcaagcacaacatggaaggaa |
31689417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 79 - 202
Target Start/End: Original strand, 17618850 - 17618973
Alignment:
| Q |
79 |
tgtgtttttgggatttaggtttttagctgtttctcagtaaaacagatatcgaaaacaagattaagagaaaaggtcgaatataaattaagaagattcatga |
178 |
Q |
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| T |
17618850 |
tgtgtttttggaatttagggttttagctgtttctcagtaaaacaaatatcgaaaacatgattaagagaagaggtcgaatataaattaagaagattcatga |
17618949 |
T |
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| Q |
179 |
gaagtaagcacaacatggaaggaa |
202 |
Q |
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| T |
17618950 |
gaagcaagcacaacatggaaggaa |
17618973 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 132 - 202
Target Start/End: Original strand, 29032567 - 29032637
Alignment:
| Q |
132 |
aacaagattaagagaaaaggtcgaatataaattaagaagattcatgagaagtaagcacaacatggaaggaa |
202 |
Q |
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| T |
29032567 |
aacatgattaagagaagaggtcgaatataaattaagaagattcatgagaagcaagcacaacatggaaggaa |
29032637 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 81 - 231
Target Start/End: Complemental strand, 16101879 - 16101734
Alignment:
| Q |
81 |
tgtttttgggatttaggtttttagctgtttctcagtaaaacagatatcgaaaacaagattaagagaaaaggtcgaatataaattaagaagattcatgaga |
180 |
Q |
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| T |
16101879 |
tgtttttgggatttagggttttagttgtttctcagtaaaacagatatcgaaaacatgattaagagaagaggtagaatataaattaagaagattcatgaga |
16101780 |
T |
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| Q |
181 |
agtaagcacaacatggaaggaaaggaaggtaattttttagcaaaccgtaac |
231 |
Q |
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| T |
16101779 |
agcaatcacaacatggaa-----ggaaggtaatttttgagcaaactgtaac |
16101734 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 62; Significance: 8e-27; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 5997329 - 5997427
Alignment:
| Q |
76 |
ttatgtgtttttgggatttaggtttttagctgtttctcagtaaaacagatatcgaaaacaagattaagagaaaaggtcgaatataaattaagaagattca |
175 |
Q |
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| T |
5997329 |
ttatgtgtttttgggatttagggttttagctgtttctctgtaaaacagatatcgaaaacatgattgagagaagaggtcga----aaattcagaagattca |
5997424 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 58; Significance: 2e-24; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 76 - 178
Target Start/End: Original strand, 42031409 - 42031507
Alignment:
| Q |
76 |
ttatgtgtttttgggatttaggtttttagctgtttctcagtaaaacagatatcgaaaacaagattaagagaaaaggtcgaatataaattaagaagattca |
175 |
Q |
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| T |
42031409 |
ttatgtgtttttgggatttagggttttagctgtttctctataaaacagatatcgaaaacatgactaagagaagaggtcga----aaattcagaagattca |
42031504 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 84 - 178
Target Start/End: Complemental strand, 42027244 - 42027154
Alignment:
| Q |
84 |
ttttgggatttaggtttttagctgtttctcagtaaaacagatatcgaaaacaagattaagagaaaaggtcgaatataaattaagaagattcatga |
178 |
Q |
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|||||||||||||| ||||||||||||||| |||||||||||||||||||| || |||||||| ||||||| ||||| ||||||||||||| |
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| T |
42027244 |
ttttgggatttagggttttagctgtttctctataaaacagatatcgaaaacatgactaagagaagaggtcga----aaattcagaagattcatga |
42027154 |
T |
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