View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21570_low_14 (Length: 250)
Name: NF21570_low_14
Description: NF21570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21570_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 156 - 236
Target Start/End: Complemental strand, 2794153 - 2794073
Alignment:
| Q |
156 |
attgaatgtggaaggtgaattgcaacacttaccttttgggtcaagtcaagtgctccattgataattgtcgtctcatcaagt |
236 |
Q |
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| T |
2794153 |
attgaatgtggaaggtgaattgcagaacttaccttttgggtcaagtcaagtgctccattgataattgtcgtctcatcaagt |
2794073 |
T |
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Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 40 - 157
Target Start/End: Complemental strand, 2794295 - 2794182
Alignment:
| Q |
40 |
ccctattactattacatttccttcatcaccaatgtaaatcaaaactcaacataggcaagagacttcatattacgctgcgttgaatatcatacattgaaaa |
139 |
Q |
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| T |
2794295 |
ccctattactattacatttcctccatcaccaatgtatatcaaaactgaacataggcaagaaacttcatat----ctgtgttgagtatcatacgttgaaaa |
2794200 |
T |
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| Q |
140 |
atagtgttttatggacat |
157 |
Q |
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| T |
2794199 |
atagtgttttttggacat |
2794182 |
T |
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Target: chr6 (Bit Score: 71; Significance: 3e-32; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 63 - 233
Target Start/End: Complemental strand, 16389944 - 16389774
Alignment:
| Q |
63 |
catcaccaatgtaaatcaaaactcaacataggcaagagacttcatattacgctgcgttgaatatcatacattgaaaaatagtgttttatggacattgaat |
162 |
Q |
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| T |
16389944 |
catcaacaatgtatatcaaaactcgacacaggtaagaaacttcatattcttctgcattgaatatcatacattgaaaatttgtatcgtattgacattagtt |
16389845 |
T |
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| Q |
163 |
gtggaaggtgaattgcaacacttaccttttgggtcaagtcaagtgctccattgataattgtcgtctcatca |
233 |
Q |
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| T |
16389844 |
gtgaaaggtgaattgcagcacttaccttttcggtcaaatcaagtgctccactgataattgttgtctcatca |
16389774 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 155 - 233
Target Start/End: Complemental strand, 48669108 - 48669030
Alignment:
| Q |
155 |
cattgaatgtggaaggtgaattgcaacacttaccttttgggtcaagtcaagtgctccattgataattgtcgtctcatca |
233 |
Q |
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||||||||||||||||||| |||| |||||||||||| |||||| |||||||||||| |||||||||||||||||||| |
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| T |
48669108 |
cattgaatgtggaaggtgacctgcagcacttaccttttcggtcaaatcaagtgctccactgataattgtcgtctcatca |
48669030 |
T |
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