View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21570_low_5 (Length: 325)
Name: NF21570_low_5
Description: NF21570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21570_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 20 - 315
Target Start/End: Complemental strand, 51990980 - 51990685
Alignment:
| Q |
20 |
aagtatttagtctgtaaatttaggtttgaatatctctaaaaaggaacaataacaatcgcatcttctccacttacaacaaaactattacgccgatcaacaa |
119 |
Q |
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| T |
51990980 |
aagtatttagtctgtaaatttaggtttgaatatctctaaaaaggaacaataacaatagcatcttctccacttacaacaaaactattacgccgatcaacaa |
51990881 |
T |
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| Q |
120 |
atgaattaccgaaacaaaatgtgaaaataggtataaagtgattttcatgttcttgttcttattaccaaaacaaacacattactaaatctcagcatcatcc |
219 |
Q |
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| T |
51990880 |
atgaattaccgaaacaaaatgtgaaaataggtataaagtgattttcatgttcttgttcttattaccaaaacaaacatattactaaatctcagcatcatcc |
51990781 |
T |
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| Q |
220 |
atatatttgattctgtttcttgttctaatttgtttcaaaacctactgctagactgatcaatatcgcaaaacaccttgatgaggattaggccctttg |
315 |
Q |
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| T |
51990780 |
atatatttgattctgtttcttgttctaatttgtttcaaaacctactgctagactgatcaatatcgcaaaacaccttgatgaggattaggccctttg |
51990685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 241 - 315
Target Start/End: Original strand, 51995936 - 51996010
Alignment:
| Q |
241 |
gttctaatttgtttcaaaacctactgctagactgatcaatatcgcaaaacaccttgatgaggattaggccctttg |
315 |
Q |
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|||||||||| | |||| | ||||||| |||||||| ||||||||||||||| |||||||||||||||| ||||| |
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| T |
51995936 |
gttctaatttatatcaatatctactgcgagactgatgaatatcgcaaaacactttgatgaggattaggctctttg |
51996010 |
T |
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