View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21570_low_6 (Length: 319)

Name: NF21570_low_6
Description: NF21570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21570_low_6
NF21570_low_6
[»] chr7 (11 HSPs)
chr7 (7-300)||(24385115-24385408)
chr7 (129-300)||(24391328-24391499)
chr7 (129-207)||(660832-660910)
chr7 (132-207)||(29859461-29859536)
chr7 (129-207)||(14076685-14076763)
chr7 (129-207)||(14386713-14386791)
chr7 (7-46)||(24391615-24391654)
chr7 (130-207)||(29874518-29874595)
chr7 (129-197)||(6864792-6864860)
chr7 (130-184)||(20058043-20058097)
chr7 (134-207)||(19344565-19344638)
[»] chr3 (1 HSPs)
chr3 (132-207)||(3625741-3625816)
[»] chr4 (7 HSPs)
chr4 (133-207)||(3565751-3565825)
chr4 (129-207)||(11970967-11971045)
chr4 (130-207)||(11981669-11981746)
chr4 (132-199)||(3560946-3561013)
chr4 (133-207)||(3557733-3557807)
chr4 (135-207)||(53774847-53774919)
chr4 (132-207)||(53790560-53790635)
[»] chr5 (2 HSPs)
chr5 (130-207)||(28763891-28763968)
chr5 (129-207)||(18964815-18964893)
[»] chr6 (3 HSPs)
chr6 (129-197)||(17369681-17369749)
chr6 (129-207)||(20770657-20770735)
chr6 (150-207)||(24950150-24950207)
[»] chr1 (2 HSPs)
chr1 (132-207)||(39379049-39379124)
chr1 (129-205)||(4366480-4366556)


Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 7 - 300
Target Start/End: Complemental strand, 24385408 - 24385115
Alignment:
Q  7 tccaccttattagtcctccaattatagagaattagttgtcgtaatacagggatttccaatatcaatgcatcaccattctcagaataaaacaatggcaaca 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24385408 tccaccttattagtcctccaattatagagaattagttgtcgtaatacagggatttccaatatcaatgcatcaccattctcagaataaaacaatggcaaca 24385309  T
Q  107 aggatatatatgaagttttaaatatttgaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcatcttccatat 206  Q
    | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24385308 acgatatatatgaagttttaaatatttgaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcatcttccatat 24385209  T
Q  207 ataaaaattggcggttccattgtaagagtaatgataacaaaaacaaaggcaatccataatcacacaaatccttgtttccttcaacaacacttca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |||||||| |||||||||||||||    
T  24385208 ataaaaattggcggttccattgtaagagtaatgataacaaaaacaaaggcaatccataagcacacaaagacttgtttcattcaacaacacttca 24385115  T

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Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 129 - 300
Target Start/End: Complemental strand, 24391499 - 24391328
Alignment:
Q  129 tatttgaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcatcttccatatataaaaattggcggttccattg 228  Q
    |||||||||||||| || |||||| ||||||||| |||||||| | ||||||||||||||||||||||||||||||| |  |||||||| ||||||  ||    
T  24391499 tatttgaagattatcattactaatgttaagaaattgactccaacatttttcaactccaaagttcttcatcttccataaaacaaaattggtggttcccatg 24391400  T
Q  229 taagagtaatgataacaaaaacaaaggcaatccataatcacacaaatccttgtttccttcaacaacacttca 300  Q
    | | ||| | ||| ||||||||||||||||||||| | |||||||||  |||  || |||||||||||||||    
T  24391399 tcaaagttaagatgacaaaaacaaaggcaatccatgagcacacaaatggttgactcattcaacaacacttca 24391328  T

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Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 660832 - 660910
Alignment:
Q  129 tatttgaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcatcttccatata 207  Q
    ||||||||||||||||| |||||||||||| ||| || ||||||||| |||||||| ||| | |||||||| |||||||    
T  660832 tatttgaagattatgataactaattttaaggaattgagtccaagactcttcaactcgaaattccttcatctgccatata 660910  T

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Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 29859536 - 29859461
Alignment:
Q  132 ttgaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcatcttccatata 207  Q
    ||||||||| |||| |||||||||||||||| |  ||||||| | |||||||||||| |||||||||| |||||||    
T  29859536 ttgaagattgtgataactaattttaagaaatggggtccaagaatcttcaactccaaatttcttcatctcccatata 29859461  T

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Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 14076763 - 14076685
Alignment:
Q  129 tatttgaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcatcttccatata 207  Q
    |||||||||||| |||| |||||||||||||||| || ||||||| | |||||||||||| | |||||| | |||||||    
T  14076763 tatttgaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatata 14076685  T

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Target: chr7; HSP #6
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 14386791 - 14386713
Alignment:
Q  129 tatttgaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcatcttccatata 207  Q
    |||||||||||| |||| |||||||||||||||| || ||||||| | |||||||||||| | |||||| | |||||||    
T  14386791 tatttgaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatata 14386713  T

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Target: chr7; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 7 - 46
Target Start/End: Complemental strand, 24391654 - 24391615
Alignment:
Q  7 tccaccttattagtcctccaattatagagaattagttgtc 46  Q
    ||||||||||||||||||||||| ||||||||||||||||    
T  24391654 tccaccttattagtcctccaattgtagagaattagttgtc 24391615  T

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Target: chr7; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 130 - 207
Target Start/End: Complemental strand, 29874595 - 29874518
Alignment:
Q  130 atttgaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcatcttccatata 207  Q
    ||||||||||| |||| |||||||||||| ||| || ||||||| | |||||| ||||| |||||||| | |||||||    
T  29874595 atttgaagattttgataactaattttaagtaatggagtccaagaatcttcaaccccaaatttcttcatttgccatata 29874518  T

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Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 197
Target Start/End: Original strand, 6864792 - 6864860
Alignment:
Q  129 tatttgaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcat 197  Q
    ||||||||||||||||| |||| ||||||| ||  || ||||||||| |||||||||||| | ||||||    
T  6864792 tatttgaagattatgataactagttttaaggaactgagtccaagactcttcaactccaaattccttcat 6864860  T

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Target: chr7; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 130 - 184
Target Start/End: Original strand, 20058043 - 20058097
Alignment:
Q  130 atttgaagattatgatgactaattttaagaaatcgactccaagacttttcaactc 184  Q
    ||||||||||| | || |||||||||||||||| ||| |||||||| ||||||||    
T  20058043 atttgaagattttcataactaattttaagaaattgacaccaagactcttcaactc 20058097  T

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Target: chr7; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 134 - 207
Target Start/End: Original strand, 19344565 - 19344638
Alignment:
Q  134 gaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcatcttccatata 207  Q
    ||||||| |||  |||||||||||||||| || ||||||| | |||||||||||| | | |||||| |||||||    
T  19344565 gaagattctgaaaactaattttaagaaattgagtccaagattgttcaactccaaattccatcatctgccatata 19344638  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 3625816 - 3625741
Alignment:
Q  132 ttgaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcatcttccatata 207  Q
    ||||||||| |||| |||||||||||||||| || ||||||||| |||||| ||||| |||||||| | |||||||    
T  3625816 ttgaagattttgataactaattttaagaaattgagtccaagactcttcaaccccaaatttcttcatttgccatata 3625741  T

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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 133 - 207
Target Start/End: Complemental strand, 3565825 - 3565751
Alignment:
Q  133 tgaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcatcttccatata 207  Q
    ||||||| ||||| |||||||||||||||| || ||||||||| |||||| ||||| | |||||||| |||||||    
T  3565825 tgaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatata 3565751  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 11970967 - 11971045
Alignment:
Q  129 tatttgaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcatcttccatata 207  Q
    ||||||||||||||||| ||||||| |||||||| || ||||||||| ||| |||||||| | |||||| | |||||||    
T  11970967 tatttgaagattatgataactaattctaagaaattgagtccaagactcttccactccaaattccttcatttgccatata 11971045  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 11981669 - 11981746
Alignment:
Q  130 atttgaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcatcttccatata 207  Q
    |||||||||||| ||| ||||||||||||||||||| |||| |||| ||| |||||||| | |||||| | |||||||    
T  11981669 atttgaagattaagataactaattttaagaaatcgagtccaggactcttccactccaaattccttcatttgccatata 11981746  T

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Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 199
Target Start/End: Original strand, 3560946 - 3561013
Alignment:
Q  132 ttgaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcatct 199  Q
    |||||||| ||||| |||||||||||||||| || ||||||||| |||||| ||||| || |||||||    
T  3560946 ttgaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattttttcatct 3561013  T

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Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 133 - 207
Target Start/End: Complemental strand, 3557807 - 3557733
Alignment:
Q  133 tgaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcatcttccatata 207  Q
    ||||||| ||||| |||||||||||||||| || ||||||||| |||||| ||||| | |||||| | |||||||    
T  3557807 tgaagatcatgataactaattttaagaaattgagtccaagactcttcaaccccaaattccttcatatgccatata 3557733  T

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Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 135 - 207
Target Start/End: Complemental strand, 53774919 - 53774847
Alignment:
Q  135 aagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcatcttccatata 207  Q
    |||||| |||| |||||||||||| ||| || ||||||||| |||||||||||| | |||||| | |||||||    
T  53774919 aagattctgataactaattttaaggaattgagtccaagactcttcaactccaaattccttcatttgccatata 53774847  T

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Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 132 - 207
Target Start/End: Complemental strand, 53790635 - 53790560
Alignment:
Q  132 ttgaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcatcttccatata 207  Q
    ||||||||| |||  |||||||||||||||| || ||||||| | ||||| |||||| ||  ||||||||||||||    
T  53790635 ttgaagattctgaaaactaattttaagaaattgagtccaagattgttcaaatccaaattttgtcatcttccatata 53790560  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 130 - 207
Target Start/End: Original strand, 28763891 - 28763968
Alignment:
Q  130 atttgaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcatcttccatata 207  Q
    ||||||||||  ||||  || ||||| || ||||||||||||||||||||||||||||| | | ||||||||||||||    
T  28763891 atttgaagatcctgatagctgattttgaggaatcgactccaagacttttcaactccaaattgcgtcatcttccatata 28763968  T

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Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 207
Target Start/End: Original strand, 18964815 - 18964893
Alignment:
Q  129 tatttgaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcatcttccatata 207  Q
    |||||||||||| |||| || ||||||||||||| || ||||||| | |||||||||||| | |||||| | |||||||    
T  18964815 tatttgaagattctgataacaaattttaagaaattgagtccaagagtcttcaactccaaattccttcatttgccatata 18964893  T

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Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 129 - 197
Target Start/End: Complemental strand, 17369749 - 17369681
Alignment:
Q  129 tatttgaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcat 197  Q
    |||||||||||| |||| |||||||||||||||| || ||||||| | |||||||||||| | ||||||    
T  17369749 tatttgaagattctgataactaattttaagaaattgagtccaagagtcttcaactccaaattccttcat 17369681  T

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Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 129 - 207
Target Start/End: Complemental strand, 20770735 - 20770657
Alignment:
Q  129 tatttgaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcatcttccatata 207  Q
    ||||||||||||||||| |||||||||||| ||| || |||| |||| ||||| |||||| | |||||| | |||||||    
T  20770735 tatttgaagattatgataactaattttaaggaattgaatccatgactcttcaattccaaattccttcatttgccatata 20770657  T

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Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 150 - 207
Target Start/End: Original strand, 24950150 - 24950207
Alignment:
Q  150 aattttaagaaatcgactccaagacttttcaactccaaagttcttcatcttccatata 207  Q
    ||||||||| ||| ||||||||||||  ||||||||||| ||| ||||||||||||||    
T  24950150 aattttaaggaattgactccaagactcctcaactccaaacttcatcatcttccatata 24950207  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 207
Target Start/End: Original strand, 39379049 - 39379124
Alignment:
Q  132 ttgaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcatcttccatata 207  Q
    |||||||| ||||| ||| |||||||||||| || ||||||||| |||||| ||||| | |||||||| |||||||    
T  39379049 ttgaagatcatgataactgattttaagaaattgagtccaagactcttcaaccccaaattccttcatctgccatata 39379124  T

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Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 129 - 205
Target Start/End: Original strand, 4366480 - 4366556
Alignment:
Q  129 tatttgaagattatgatgactaattttaagaaatcgactccaagacttttcaactccaaagttcttcatcttccata 205  Q
    |||||||||||| || | ||||| |||||||||| || ||||||||| |||||| || || |||||||||| |||||    
T  4366480 tatttgaagattctggtaactaactttaagaaatggagtccaagactcttcaaccccgaatttcttcatctgccata 4366556  T

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