View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21570_low_7 (Length: 309)

Name: NF21570_low_7
Description: NF21570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21570_low_7
NF21570_low_7
[»] chr4 (2 HSPs)
chr4 (137-301)||(12210303-12210476)
chr4 (1-123)||(12210531-12210654)
[»] chr8 (2 HSPs)
chr8 (137-301)||(16102115-16102288)
chr8 (1-141)||(16101934-16102075)
[»] chr3 (2 HSPs)
chr3 (136-301)||(17618442-17618616)
chr3 (1-141)||(17618655-17618795)
[»] chr7 (3 HSPs)
chr7 (25-139)||(5997045-5997160)
chr7 (137-226)||(5996769-5996858)
chr7 (245-301)||(5996628-5996683)
[»] chr1 (3 HSPs)
chr1 (25-139)||(42031122-42031238)
chr1 (137-225)||(42030847-42030935)
chr1 (245-301)||(42030705-42030760)


Alignment Details
Target: chr4 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 137 - 301
Target Start/End: Complemental strand, 12210476 - 12210303
Alignment:
Q  137 tgggagctggtgttgaagcaattttatgctcggctgggtttggaggatttagcaaggccattgttgtttttcgtttcggctatcttattggagttttgtg 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  12210476 tgggagctggtgttgaagcaattttatgctcggctgggtttggaggatttagcaaggccattgttgtttttggtttcggctaccttattggagttttgtg 12210377  T
Q  237 gtttcgggtgtttg---------tattcggtgttccgtcgatatgcggcacctgtttatttgtattgatgatgt 301  Q
    |||| |||||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12210376 gttttgggtgtttgtattgtttgtattcggtgttccgtcgatatgcggcacctgtttatttgtattgatgatgt 12210303  T

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Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 1 - 123
Target Start/End: Complemental strand, 12210654 - 12210531
Alignment:
Q  1 ttatcaattttgaattttgtatgtaatagtggttctacaaatggtttttt-gttgaattttgattcagttcaggtgctgcatatcaacaaagaaaattgg 99  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||||||    
T  12210654 ttatcaattttgaattttgtaagtaatagtggttctacaaatggtttttttgttgaattttgattcagttcaggtgctacatatcaacaaagaaaattgg 12210555  T
Q  100 aaagaagagctatattggttatta 123  Q
    ||||||||||||||||||||||||    
T  12210554 aaagaagagctatattggttatta 12210531  T

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Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 137 - 301
Target Start/End: Original strand, 16102115 - 16102288
Alignment:
Q  137 tgggagctggtgttgaagcaattttatgctcggctgggtttggaggatttagcaaggccattgttgtttttcgtttcggctatcttattggagttttgtg 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||  ||    
T  16102115 tgggagctggtgttgaagcaattttatgctcggctgggtttggaggatttagcaaggccattgttgtttttggtttcggctaccttattggagtttaatg 16102214  T
Q  237 gtttcggg---------tgtttgtattcggtgttccgtcgatatgcggcacctgtttatttgtattgatgatgt 301  Q
    |||| |||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16102215 gtttagggtgtttgtattgtttgtattcggtgttccgtcgatatgcggcacctgtttatttgtattgatgatgt 16102288  T

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Target: chr8; HSP #2
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 1 - 141
Target Start/End: Original strand, 16101934 - 16102075
Alignment:
Q  1 ttatcaattttgaattttgtatgtaatagtggttctacaaatggtttt-ttgttgaattttgattcagttcaggtgctgcatatcaacaaagaaaattgg 99  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| |||| ||||||| ||||||||||||||||| |||    
T  16101934 ttatcaattttgaattttgtaagtaatagtggttctacaaatggtttttttgttgaattttgatttagtttaggtgctacatatcaacaaagaaaaatgg 16102033  T
Q  100 aaagaagagctatattggttattattactgtcatggttggga 141  Q
    |||||||| |||||||||||||||||||||||||||||||||    
T  16102034 aaagaagatctatattggttattattactgtcatggttggga 16102075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 119; Significance: 8e-61; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 136 - 301
Target Start/End: Complemental strand, 17618616 - 17618442
Alignment:
Q  136 ttgggagctggtgttgaagcaattttatgctcggctgggtttggaggatttagcaaggccattgttgtttttcgtttcggctatcttattggagttttgt 235  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||| ||||||||||||||||    
T  17618616 ttgggagctggtcttgaagcaattttatgctcggctgggtttggaggatttcgcaaggccattgttgtttttggtttcggctaccttattggagttttgt 17618517  T
Q  236 ggtttcgggtgtttg---------tattcggtgttccgtcgatatgcggcacctgtttatttgtattgatgatgt 301  Q
    |||||| ||||||||         ||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17618516 ggtttcaggtgtttgtattgtttgtattcggtgttccatcgatatgcggcacctgtttatttgtattgatgatgt 17618442  T

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Target: chr3; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 1 - 141
Target Start/End: Complemental strand, 17618795 - 17618655
Alignment:
Q  1 ttatcaattttgaattttgtatgtaatagtggttctacaaatggttttttgttgaattttgattcagttcaggtgctgcatatcaacaaagaaaattgga 100  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||||||||||||||||||||    
T  17618795 ttatcaattctgaattttgtaagtaatagtggttctacaaatggttttttgttgaatttttattcagtacaggtgctacatatcaacaaagaaaattgga 17618696  T
Q  101 aagaagagctatattggttattattactgtcatggttggga 141  Q
    ||||| || ||||||||||||||||||||||||||||||||    
T  17618695 aagaatagttatattggttattattactgtcatggttggga 17618655  T

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Target: chr7 (Bit Score: 84; Significance: 6e-40; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 5997160 - 5997045
Alignment:
Q  25 aatagtggttctacaaatggttttttgttgaattttgattcagttcaggtgctgcatatcaacaaagaaaattggaaagaagagctatattg-gttatta 123  Q
    ||||||||||||||||||| |||||||||||||||||||| | ||| |||||| |||||||||||||||||| ||||||||||||||||||| |||||||    
T  5997160 aatagtggttctacaaatgattttttgttgaattttgattaatttcgggtgctacatatcaacaaagaaaatgggaaagaagagctatattgagttatta 5997061  T
Q  124 ttactgtcatggttgg 139  Q
    ||||||||||||||||    
T  5997060 ttactgtcatggttgg 5997045  T

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Target: chr7; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 137 - 226
Target Start/End: Complemental strand, 5996858 - 5996769
Alignment:
Q  137 tgggagctggtgttgaagcaattttatgctcggctgggtttggaggatttagcaaggccattgttgtttttcgtttcggctatcttattg 226  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||| |||||||    
T  5996858 tgggagctggtgttgaagcaattttatgctcggctgggtttggaggatttaacaaggctattgttgtttttggtttcggctaccttattg 5996769  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 5996683 - 5996628
Alignment:
Q  245 tgtttgtattcggtgttccgtcgatatgcggcacctgtttatttgtattgatgatgt 301  Q
    |||||||||| ||||||||||| ||||| |||||||  || ||||||||||||||||    
T  5996683 tgtttgtatttggtgttccgtctatatgaggcacct-attgtttgtattgatgatgt 5996628  T

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Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 25 - 139
Target Start/End: Complemental strand, 42031238 - 42031122
Alignment:
Q  25 aatagtggttctacaaatggtttttt-gttgaattttgattcagttcaggtgctgcatatcaacaaagaaaattggaaagaagagctatattg-gttatt 122  Q
    ||||||||||||||||||| |||||| |||||||||||||| | ||| |||||| |||||||||||||||||| | ||||||||||||||||| ||||||    
T  42031238 aatagtggttctacaaatgatttttttgttgaattttgattaatttcgggtgctacatatcaacaaagaaaatggaaaagaagagctatattgagttatt 42031139  T
Q  123 attactgtcatggttgg 139  Q
    |||||||||||||||||    
T  42031138 attactgtcatggttgg 42031122  T

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Target: chr1; HSP #2
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 137 - 225
Target Start/End: Complemental strand, 42030935 - 42030847
Alignment:
Q  137 tgggagctggtgttgaagcaattttatgctcggctgggtttggaggatttagcaaggccattgttgtttttcgtttcggctatcttatt 225  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||| |||||| |||||||||||| |||||||||| ||||||    
T  42030935 tgggagctggtgttgaagaaattttatgctcggctgggtttggaggatttaacaaggctattgttgtttttggtttcggctaccttatt 42030847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 245 - 301
Target Start/End: Complemental strand, 42030760 - 42030705
Alignment:
Q  245 tgtttgtattcggtgttccgtcgatatgcggcacctgtttatttgtattgatgatgt 301  Q
    |||||||||| ||||||||||| |||||||||||||  || ||||||||||||||||    
T  42030760 tgtttgtatttggtgttccgtctatatgcggcacct-attgtttgtattgatgatgt 42030705  T

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