View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21570_low_9 (Length: 298)
Name: NF21570_low_9
Description: NF21570
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21570_low_9 |
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Alignment Details
Target: chr4 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 14 - 280
Target Start/End: Original strand, 42910794 - 42911060
Alignment:
| Q |
14 |
atcatcattagaaaatattatgtggtctatagatttataatgagctgtccaagtcttcaacaattttccactagtcacctacaattcatcattaacaaca |
113 |
Q |
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| T |
42910794 |
atcatcattagaaaatattatgtggtctacagatttataatgagctgtccaagtcttcaacaattttccactagtcacctacaattcatcataaacaaca |
42910893 |
T |
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| Q |
114 |
caatttcacaaacaaaataatctaaatatagcattaaaccttacatgtaagggagtcttaggatcaaatttttgatcaaacattcacccattttaagtca |
213 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42910894 |
caatttcacaaacaaaataatccaaatatagcattaaaccttacatgtaagggagtcttaggatcaaatttttgatcaaacattcacccattttaagtca |
42910993 |
T |
|
| Q |
214 |
tattcaataaactattatactcaaaatgtctaattgaggaaatagctaggtttttggatgtttaatt |
280 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42910994 |
tattcaataaattattatactcaaaatgtctaattgaggaaatagctaggtttttggatgtttaatt |
42911060 |
T |
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