View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21571_high_19 (Length: 307)
Name: NF21571_high_19
Description: NF21571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21571_high_19 |
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| [»] chr4 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] chr3 (2 HSPs) |
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| [»] scaffold0002 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 298; Significance: 1e-167; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 10 - 307
Target Start/End: Complemental strand, 18152921 - 18152624
Alignment:
| Q |
10 |
ggtgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtactcggaactacgattattggaggaacaatac |
109 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18152921 |
ggtgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtactcggaactacgattattggaggaacaatac |
18152822 |
T |
|
| Q |
110 |
ctaaacctgtggatgctccagaatcttttcgattgctcgttcgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagactt |
209 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18152821 |
ctaaacctgtggatgctccagaatcttttcgattgctcgttcgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagactt |
18152722 |
T |
|
| Q |
210 |
ccagattcaaaggaaggaagtttaattggactgaatcagaaattttattctatgattgatcagtataaacatcaacaccttcgaattggatcagtttc |
307 |
Q |
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| T |
18152721 |
ccagattcaaaggaaggaagtttaattggactgaatcagaaattttattctatgattgatcagtataaacatcaacaccttcgaattggatcagtttc |
18152624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 12 - 302
Target Start/End: Original strand, 1785817 - 1786107
Alignment:
| Q |
12 |
tgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtactcggaactacgattattggaggaacaatacct |
111 |
Q |
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||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||| |||||| |
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| T |
1785817 |
tgttgctaatattttacaagagatgttgacttataaatctgatcatattaaagctcgtcaagaagtactcggaactacgattattagtggaaaaatacca |
1785916 |
T |
|
| Q |
112 |
aaacctgtggatgctccagaatcttttcgattgctcgttcgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagacttcc |
211 |
Q |
| |
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|||| | ||||||| || ||||||| ||||| |||||||||||||||||||||| ||| ||||| ||||||||||||| ||| |||||||||||||| |
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| T |
1785917 |
aaactggaggatgcttcatgatctttttgattgttcgttcgagaactacgatctttagctttggaatggaatcatttccttatatatgagaaagacttcc |
1786016 |
T |
|
| Q |
212 |
agattcaaaggaaggaagtttaattggactgaatcagaaattttattctatgattgatcagtataaacatcaacaccttcgaattggatca |
302 |
Q |
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||||||||| || |||||||||||||||| ||||| || ||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
1786017 |
agattcaaaataatgaagtttaattggacttaatcataagttttattctatgactgatcagtataaacatcaacaccttcgaattggatca |
1786107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 6 - 307
Target Start/End: Complemental strand, 23937210 - 23936914
Alignment:
| Q |
6 |
gtttggtgttgctcatattttacaagagatgctgacttataaatctgatcatatt--aaagctcgtcaagaagtactcggaactacgattattggaggaa |
103 |
Q |
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|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||||||||| |
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| T |
23937210 |
gtttggtgttgctcatattttacaagagatgttgacttataaatctgatcatattttaaagtgcgtcaagaagtactcagaactacgattattggaggaa |
23937111 |
T |
|
| Q |
104 |
caatacctaaacctgtggatgctccagaatcttttcgattgctcgttcgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaa |
203 |
Q |
| |
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|||||||||||| |||||||||||||||||||||| ||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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| T |
23937110 |
caatacctaaacttgtggatgctccagaatctttttgattgctcgttcgagaactacaatcttt-------gaactgaatcatttccttgtatctgagaa |
23937018 |
T |
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| Q |
204 |
agacttccagattcaaaggaaggaagtttaattggactgaatcagaaattttattctatgattgatcagtataaacatcaacaccttcgaattggatcag |
303 |
Q |
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||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||| |
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| T |
23937017 |
agacttccaaattcaaaggaaggaagtttaattggactgaatcagaaattttattctatgattgatcagtataaagatcaacaccttcgagttggatcaa |
23936918 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 174; Significance: 1e-93; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 174; E-Value: 1e-93
Query Start/End: Original strand, 12 - 253
Target Start/End: Complemental strand, 18638070 - 18637829
Alignment:
| Q |
12 |
tgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtactcggaactacgattattggaggaacaatacct |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||| | |
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| T |
18638070 |
tgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagcttttcaagaagtactcaaaactacgattattggaggaacaatacat |
18637971 |
T |
|
| Q |
112 |
aaacctgtggatgctccagaatcttttcgattgctcgttcgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagacttcc |
211 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||| | |||||||| || ||||||||| | ||||||||||||||||||| |||||||||||| | |
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| T |
18637970 |
aaacatgtggatgctccataatcttttcgattgctcgtgcaagaactacaatatttggctcttaagctgaatcatttccttgtatatgagaaagactttc |
18637871 |
T |
|
| Q |
212 |
agattcaaaggaaggaagtttaattggactgaatcagaaatt |
253 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
18637870 |
agattcaaaggaaggaaatttaattggactgaatcagaaatt |
18637829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 86 - 253
Target Start/End: Complemental strand, 18651430 - 18651263
Alignment:
| Q |
86 |
ctacgattattggaggaacaatacctaaacctgtggatgctccagaatcttttcgattgctcgttcgagaactacgatctttggctctggaactgaatca |
185 |
Q |
| |
|
|||||||||||||||||||||||| ||||| ||||||||||||| ||||||||||||||||||| | |||||||| || ||||||||| | |||||||| |
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|
| T |
18651430 |
ctacgattattggaggaacaatacataaacatgtggatgctccataatcttttcgattgctcgtgcaagaactacaatatttggctcttaagctgaatca |
18651331 |
T |
|
| Q |
186 |
tttccttgtatctgagaaagacttccagattcaaaggaaggaagtttaattggactgaatcagaaatt |
253 |
Q |
| |
|
||||||||||| |||||||||||| |||||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
18651330 |
tttccttgtatatgagaaagactttcagattcaaaggaaggaaatttaattggactgaatcagaaatt |
18651263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 12 - 182
Target Start/End: Original strand, 18604945 - 18605115
Alignment:
| Q |
12 |
tgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtactcggaactacgattattggaggaacaatacct |
111 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||| |||||||||||||||| | |
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| T |
18604945 |
tgttgcttttattttacaagagatgctgacttataaatctgatcatattaaagcttttcaagaagtactcaaaactacgatcattggaggaacaatacat |
18605044 |
T |
|
| Q |
112 |
aaacctgtggatgctccagaatcttttcgattgctcgttcgagaactacgatctttggctctggaactgaa |
182 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||||||| | |||||||| || | ||||||| || ||||| |
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|
| T |
18605045 |
aaacatgtggatgctccataatcttttcgattgctcgtgcaagaactacaatatatggctcttgagctgaa |
18605115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 216 - 253
Target Start/End: Original strand, 18605124 - 18605161
Alignment:
| Q |
216 |
tcaaaggaaggaagtttaattggactgaatcagaaatt |
253 |
Q |
| |
|
||||||||||||| |||||||||||||||||| ||||| |
|
|
| T |
18605124 |
tcaaaggaaggaaatttaattggactgaatcataaatt |
18605161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 162; Significance: 2e-86; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 12 - 253
Target Start/End: Original strand, 38578292 - 38578533
Alignment:
| Q |
12 |
tgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtactcggaactacgattattggaggaacaatacct |
111 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||| |||||||||||| | |
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|
| T |
38578292 |
tgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagcttttcaagaagtactcaaaactacgattattagaggaacaatacat |
38578391 |
T |
|
| Q |
112 |
aaacctgtggatgctccagaatcttttcgattgctcgttcgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagacttcc |
211 |
Q |
| |
|
||| ||||||||||||| ||||||||||||||||||| | |||||||| || ||||||||| || |||||||||||||||||| |||||||||||| | |
|
|
| T |
38578392 |
caacatgtggatgctccataatcttttcgattgctcgtgcaagaactacaatatttggctcttgaggtgaatcatttccttgtatatgagaaagactttc |
38578491 |
T |
|
| Q |
212 |
agattcaaaggaaggaagtttaattggactgaatcagaaatt |
253 |
Q |
| |
|
||||||||||||| |||||||||||| ||||||||||||||| |
|
|
| T |
38578492 |
agattcaaaggaatgaagtttaattgtactgaatcagaaatt |
38578533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 157; Significance: 2e-83; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 151 - 307
Target Start/End: Original strand, 28371607 - 28371763
Alignment:
| Q |
151 |
cgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagacttccagattcaaaggaaggaagtttaattggactgaatcagaa |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
28371607 |
cgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagacttccagattcaaaggaaggaagtttaattggactgaatcagaa |
28371706 |
T |
|
| Q |
251 |
attttattctatgattgatcagtataaacatcaacaccttcgaattggatcagtttc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28371707 |
attttattctatgattgatcagtataaacatcaacaccttcgaattggatcagtttc |
28371763 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 157; E-Value: 2e-83
Query Start/End: Original strand, 151 - 307
Target Start/End: Original strand, 28379429 - 28379585
Alignment:
| Q |
151 |
cgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagacttccagattcaaaggaaggaagtttaattggactgaatcagaa |
250 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28379429 |
cgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaagacttccagattcaaaggaaggaagtttaattggactgaatcagaa |
28379528 |
T |
|
| Q |
251 |
attttattctatgattgatcagtataaacatcaacaccttcgaattggatcagtttc |
307 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28379529 |
attttattctatgattgatcagtataaacatcaacaccttcgaattggatcagtttc |
28379585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0002 (Bit Score: 98; Significance: 3e-48; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 7 - 232
Target Start/End: Original strand, 222784 - 223009
Alignment:
| Q |
7 |
tttggtgttgctcatattttacaagagatgctgacttataaatctgatcatattaaagctcgtcaagaagtactcggaactacgattattggaggaacaa |
106 |
Q |
| |
|
||||||||||||||||||||||||||||| || |||||||||||||| ||| ||| |||||| |||||| |||| ||||||| ||| || || |
|
|
| T |
222784 |
tttggtgttgctcatattttacaagagatacttacttataaatctgaccatcttatagctcgccaagaaatacttaatgctacgatctggggaaaaagaa |
222883 |
T |
|
| Q |
107 |
tacctaaacctgtggatgctccagaatcttttcgattgctcgttcgagaactacgatctttggctctggaactgaatcatttccttgtatctgagaaaga |
206 |
Q |
| |
|
||||||| | || |||| ||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| || | |
|
|
| T |
222884 |
tacctaatcatgaggatcctccagaatcttttcgagtgctcgttcgagaactacgatctttggctctagaactgaatcatttccttgtatctgaaaagaa |
222983 |
T |
|
| Q |
207 |
cttccagattcaaaggaaggaagttt |
232 |
Q |
| |
|
||||||| || | ||| ||||||||| |
|
|
| T |
222984 |
cttccaggttaatagggaggaagttt |
223009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 6532359 - 6532280
Alignment:
| Q |
163 |
tctttggctctggaactgaatcatttccttgtatctgagaaagacttccagattcaaaggaaggaagtttaattggactg |
242 |
Q |
| |
|
||||||||||| |||| |||| ||||||| |||||||| |||| |||||||||||||| || |||||| |||||||| |
|
|
| T |
6532359 |
tctttggctcttgaacggaattgtttccttatatctgaggaagatttccagattcaaagaaaatgagtttatttggactg |
6532280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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