View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21571_high_22 (Length: 300)
Name: NF21571_high_22
Description: NF21571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21571_high_22 |
 | |
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| [»] chr1 (7 HSPs) |
| |
|
| [»] chr4 (5 HSPs) |
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| [»] chr7 (3 HSPs) |
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|
| [»] chr6 (4 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 7 - 300
Target Start/End: Original strand, 32350886 - 32351179
Alignment:
| Q |
7 |
tttggtgttgtctgttgatgaggaggattggggtcctagaccgtccaggttgttaaagtgttggactgatattccgggttataagcagtttgtcagtact |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32350886 |
tttggtgttgtctgttgatgaggaggattggggtcctagatcgtccaggttattaaagtgttggactgatattccgggttataagcagtttgttagtact |
32350985 |
T |
|
| Q |
107 |
aaatggaaatcttttcaggttgccggttagggtggttatgtgttaaaggaaaagttcaaattgattaaagtggccattaaggagtggcatgtcaaccata |
206 |
Q |
| |
|
|||||||||||||||||||| | ||| | | |||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||| |
|
|
| T |
32350986 |
aaatggaaatcttttcaggtcgacggctggagtggttatgtgttaaaggaaaagttcaaattgattaaagtggcccttaaggaatggcatgtcaaccata |
32351085 |
T |
|
| Q |
207 |
ctcaaaacttaccaggaaagataaccgctctaaaggacaggttggcggagttagatgggaaaggagaaggcgagttgttgtctgatggtgagtg |
300 |
Q |
| |
|
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||| |
|
|
| T |
32351086 |
ctcaaaacttaccaggtaagataaccgcactaaaggacaggttggcggagttagatgcgaaaggagaaggcgagttgttgtctgatgttgagtg |
32351179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 90 - 300
Target Start/End: Complemental strand, 5499517 - 5499307
Alignment:
| Q |
90 |
agcagtttgtcagtactaaatggaaatcttttcaggttgccggttagggtggttatgtgttaaaggaaaagttcaaattgattaaagtggccattaagga |
189 |
Q |
| |
|
|||||||||| ||| |||| ||||| | | ||| ||||| |||| |||||||| ||||||||||||||||||||||||||||||||||||| | ||||| |
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|
| T |
5499517 |
agcagtttgtaagttctaagtggaattatcttcgggttgatggttggggtggttttgtgttaaaggaaaagttcaaattgattaaagtggccctaaagga |
5499418 |
T |
|
| Q |
190 |
gtggcatgtcaaccatactcaaaacttaccaggaaagataaccgctctaaaggacaggttggcggagttagatgggaaaggagaaggcgagttgttgtct |
289 |
Q |
| |
|
|||||||| ||||||||||||||||||||||| ||||||||| | ||| ||||| ||| |||||| ||||||||||||| |||||| || |||||||| |
|
|
| T |
5499417 |
gtggcatgccaaccatactcaaaacttaccagtaaagataactggtctgaaggataggatggcggtgttagatgggaaatgagaagtcggactgttgtct |
5499318 |
T |
|
| Q |
290 |
gatggtgagtg |
300 |
Q |
| |
|
|||| |||||| |
|
|
| T |
5499317 |
gatgttgagtg |
5499307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 7 - 99
Target Start/End: Complemental strand, 5500176 - 5500084
Alignment:
| Q |
7 |
tttggtgttgtctgttgatgaggaggattggggtcctagaccgtccaggttgttaaagtgttggactgatattccgggttataagcagtttgt |
99 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5500176 |
tttggtgttgtctgttcatgaggagaattggggtcctagaccgtccaggttattaaagtgttggaccgatattccgggttataagcagtttgt |
5500084 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 14 - 159
Target Start/End: Complemental strand, 26740651 - 26740506
Alignment:
| Q |
14 |
ttgtctgttgatgaggaggattggggtcctagaccgtccaggttgttaaagtgttggactgatattccgggttataagcagtttgtcagtactaaatgga |
113 |
Q |
| |
|
|||||||||||||| ||| | | ||||||| |||||||| | |||| |||||||||||||||||| | ||||||| | ||||||| |||| || |||| |
|
|
| T |
26740651 |
ttgtctgttgatgaagagaactagggtcctcgaccgtcccgtctgttgaagtgttggactgatatttctggttatagggagtttgtgagtaacaagtgga |
26740552 |
T |
|
| Q |
114 |
aatcttttcaggttgccggttagggtggttatgtgttaaaggaaaa |
159 |
Q |
| |
|
|||||||||||||| || | |||||| ||||| ||||||||||| |
|
|
| T |
26740551 |
aatcttttcaggtttatgggtggggtggctatgtcttaaaggaaaa |
26740506 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 57 - 168
Target Start/End: Original strand, 10708887 - 10708998
Alignment:
| Q |
57 |
tgttaaagtgttggactgatattccgggttataagcagtttgtcagtactaaatggaaatcttttcaggttgccggttagggtggttatgtgttaaagga |
156 |
Q |
| |
|
|||| ||||||||||| |||||||| ||||||| ||||||| | ||| |||| ||||| |||||||||||| | |||| |||||| ||||| ||||| || |
|
|
| T |
10708887 |
tgttgaagtgttggaccgatattcctggttataggcagtttatgagttctaagtggaagtcttttcaggtttctggttggggtggctatgtcttaaaaga |
10708986 |
T |
|
| Q |
157 |
aaagttcaaatt |
168 |
Q |
| |
|
||| |||||||| |
|
|
| T |
10708987 |
aaaattcaaatt |
10708998 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 25502555 - 25502738
Alignment:
| Q |
15 |
tgtctgttgatgaggaggattggggtcctagaccgtccaggttgttaaagtgttggactgatattccgggttataagcagtttgtcagtactaaatggaa |
114 |
Q |
| |
|
||||||| |||||||| |||||||| || ||||| | || |||| | ||||||| ||||| ||||| ||||| || ||||| |||| || ||||| |
|
|
| T |
25502555 |
tgtctgtggatgaggatgattggggaccaagaccaacgagaatgttgcaatgttggaaggatatcccggggtataatcaatttgtgagtagcaagtggaa |
25502654 |
T |
|
| Q |
115 |
atcttttcaggttgccggttagggtggttatgtgttaaaggaaaagttcaaattgattaaagtggccattaaggagtggcatgt |
198 |
Q |
| |
|
|||||||||||| | |||| ||| |||||||| ||||||||||| || ||| |||| ||| |||| | |||||||||||||| |
|
|
| T |
25502655 |
atcttttcaggtagatggttgggggggttatgtcttaaaggaaaaattgaaaatgataaaattggctctgaaggagtggcatgt |
25502738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 136 - 178
Target Start/End: Original strand, 24924560 - 24924602
Alignment:
| Q |
136 |
gggtggttatgtgttaaaggaaaagttcaaattgattaaagtg |
178 |
Q |
| |
|
|||||| |||||||| ||||||||||||||| ||||||||||| |
|
|
| T |
24924560 |
gggtggctatgtgttgaaggaaaagttcaaaatgattaaagtg |
24924602 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 300
Target Start/End: Original strand, 8485772 - 8486065
Alignment:
| Q |
7 |
tttggtgttgtctgttgatgaggaggattggggtcctagaccgtccaggttgttaaagtgttggactgatattccgggttataagcagtttgtcagtact |
106 |
Q |
| |
|
||||||||||||||||||||||||| |||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8485772 |
tttggtgttgtctgttgatgaggagaattggggtcctagaccgtccagattattaaagtgttggactgatattccgggttataagcagtttgttagtact |
8485871 |
T |
|
| Q |
107 |
aaatggaaatcttttcaggttgccggttagggtggttatgtgttaaaggaaaagttcaaattgattaaagtggccattaaggagtggcatgtcaaccata |
206 |
Q |
| |
|
|||||||||||| ||||||| | || || |||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |||||||| |
|
|
| T |
8485872 |
aaatggaaatctattcaggtagacgtttggggtggatatgtgttaaaggaaaagttcaaattgattaaagtggccctaaaggagtggcatgccaaccata |
8485971 |
T |
|
| Q |
207 |
ctcaaaacttaccaggaaagataaccgctctaaaggacaggttggcggagttagatgggaaaggagaaggcgagttgttgtctgatggtgagtg |
300 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
8485972 |
ctcaaaacttaccaggaaatttaaccgctctgaaggacaggttggcggtgttagatgggaaaggagaaggcgagttgttgtctgatgttgagtg |
8486065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 14 - 197
Target Start/End: Original strand, 10560887 - 10561070
Alignment:
| Q |
14 |
ttgtctgttgatgaggaggattggggtcctagaccgtccaggttgttaaagtgttggactgatattccgggttataagcagtttgtcagtactaaatgga |
113 |
Q |
| |
|
||||||||||||| || | |||||||| | |||||| | ||||| |||||||||||||||||||| ||||| | ||||||| |||| || |||| |
|
|
| T |
10560887 |
ttgtctgttgatgtagataactggggtccgcggccgtcccgtttgttgaagtgttggactgatattcctggttacagatagtttgtgagtaacaagtgga |
10560986 |
T |
|
| Q |
114 |
aatcttttcaggttgccggttagggtggttatgtgttaaaggaaaagttcaaattgattaaagtggccattaaggagtggcatg |
197 |
Q |
| |
|
| |||||||||||| | |||| |||||| ||||| |||||| |||| |||||||| |||||| | || ||||||||||||||| |
|
|
| T |
10560987 |
agtcttttcaggtttctggttggggtggctatgtcttaaagaaaaaattcaaattaattaaaattgctcttaaggagtggcatg |
10561070 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 15 - 198
Target Start/End: Complemental strand, 19650273 - 19650090
Alignment:
| Q |
15 |
tgtctgttgatgaggaggattggggtcctagaccgtccaggttgttaaagtgttggactgatattccgggttataagcagtttgtcagtactaaatggaa |
114 |
Q |
| |
|
||||||| |||||||| |||||||| |||||||| | || |||| | ||||||| ||||| ||||| ||||| || ||||| |||| ||| ||||| |
|
|
| T |
19650273 |
tgtctgtggatgaggatgattggggacctagaccaacgagaatgttgcaatgttggaaggatataccggggtataatcaatttgtgagtagtaagtggaa |
19650174 |
T |
|
| Q |
115 |
atcttttcaggttgccggttagggtggttatgtgttaaaggaaaagttcaaattgattaaagtggccattaaggagtggcatgt |
198 |
Q |
| |
|
|||||||||||| | |||| || |||||||| |||||||||||||| ||| |||| ||| || | | |||||||||||||| |
|
|
| T |
19650173 |
atcttttcaggtagatggttgagggggttatgtcttaaaggaaaagttgaaaatgataaaattgtctctgaaggagtggcatgt |
19650090 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 57 - 168
Target Start/End: Complemental strand, 20398101 - 20397990
Alignment:
| Q |
57 |
tgttaaagtgttggactgatattccgggttataagcagtttgtcagtactaaatggaaatcttttcaggttgccggttagggtggttatgtgttaaagga |
156 |
Q |
| |
|
|||| ||||||||||| |||||||| | ||||| ||||||||| |||| || ||||| |||||||||||| | |||| |||||| ||||| ||||| || |
|
|
| T |
20398101 |
tgttgaagtgttggaccgatattcctgattataggcagtttgtgagtaacaagtggaagtcttttcaggtttctggttggggtggctatgtcttaaaaga |
20398002 |
T |
|
| Q |
157 |
aaagttcaaatt |
168 |
Q |
| |
|
||| |||||||| |
|
|
| T |
20398001 |
aaaattcaaatt |
20397990 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 197
Target Start/End: Complemental strand, 23281266 - 23281199
Alignment:
| Q |
130 |
cggttagggtggttatgtgttaaaggaaaagttcaaattgattaaagtggccattaaggagtggcatg |
197 |
Q |
| |
|
||||| |||||||||||||||||| ||||| || |||||||| |||||||| | ||||||||||||| |
|
|
| T |
23281266 |
cggttggggtggttatgtgttaaaagaaaaatttaaattgatgaaagtggctttgaaggagtggcatg |
23281199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 213; Significance: 1e-117; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 8 - 300
Target Start/End: Complemental strand, 13442643 - 13442351
Alignment:
| Q |
8 |
ttggtgttgtctgttgatgaggaggattggggtcctagaccgtccaggttgttaaagtgttggactgatattccgggttataagcagtttgtcagtacta |
107 |
Q |
| |
|
||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
13442643 |
ttggtgttgactgttgacgaggaggattggggtcctagaccgtccaggttattaaaatgttggactgatattccgggttataagcagtttgttagtacta |
13442544 |
T |
|
| Q |
108 |
aatggaaatcttttcaggttgccggttagggtggttatgtgttaaaggaaaagttcaaattgattaaagtggccattaaggagtggcatgtcaaccatac |
207 |
Q |
| |
|
||||||||||||||||||| | ||| | ||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| |
|
|
| T |
13442543 |
aatggaaatcttttcaggtcgacggctgggggggttatgtgttaaaggaaaagttcaaattgattaaagtggcccttaaggaatggcatgtcaaccatac |
13442444 |
T |
|
| Q |
208 |
tcaaaacttaccaggaaagataaccgctctaaaggacaggttggcggagttagatgggaaaggagaaggcgagttgttgtctgatggtgagtg |
300 |
Q |
| |
|
||||||||||| ||| ||||| |||||| | ||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||| |
|
|
| T |
13442443 |
tcaaaacttacgaggtaagattaccgctttgaaggacaggttggcggagttagatgcgaagggagaaggcgagttgttgtctgatgttgagtg |
13442351 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 53 - 225
Target Start/End: Original strand, 33794672 - 33794843
Alignment:
| Q |
53 |
aggttgttaaagtgttggactgatattccgggttataagcagtttgtcagtactaaatggaaatcttttcaggttgccggttagggtggttatgtgttaa |
152 |
Q |
| |
|
|||||||| |||||||||| |||||||| || ||| | || ||||| |||| ||| ||||||||| | |||| | |||| ||| ||||||||||||| |
|
|
| T |
33794672 |
aggttgttgaagtgttggaaagatattccagggtatgatcaatttgtgagtagtaagtggaaatctctccagggagatggttgggg-ggttatgtgttaa |
33794770 |
T |
|
| Q |
153 |
aggaaaagttcaaattgattaaagtggccattaaggagtggcatgtcaaccatactcaaaacttaccaggaaa |
225 |
Q |
| |
|
||||||| || ||| |||| ||| | || |||||||||||||||| ||||||||| | ||||||||||| |
|
|
| T |
33794771 |
aggaaaattttaaaatgatcaaattagctcttaaggagtggcatgtttctcatactcaatatttaccaggaaa |
33794843 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 107 - 180
Target Start/End: Complemental strand, 20658401 - 20658328
Alignment:
| Q |
107 |
aaatggaaatcttttcaggttgccggttagggtggttatgtgttaaaggaaaagttcaaattgattaaagtggc |
180 |
Q |
| |
|
||||||||||| || || || | |||| ||| |||||||||||||| ||||||||||| ||||||||| |||| |
|
|
| T |
20658401 |
aaatggaaatcgttgcaagtggaaggttggggcggttatgtgttaaaagaaaagttcaagttgattaaaatggc |
20658328 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 172; Significance: 2e-92; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 172; E-Value: 2e-92
Query Start/End: Original strand, 7 - 300
Target Start/End: Complemental strand, 15676411 - 15676125
Alignment:
| Q |
7 |
tttggtgttgtctgttgatgaggaggattggggtcctagaccgtccaggttgttaaagtgttggactgatattccgggttataagcagtttgtcagtact |
106 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||| |||||||| |||||| |
|
|
| T |
15676411 |
tttggtgttgtctgttgatgaggagaattggggtcctaggccgtccaggttattaaagtgttggactgatattccgggttataaacagtttgttagtact |
15676312 |
T |
|
| Q |
107 |
aaatggaaatcttttcaggttgccggttagggtggttatgtgttaaaggaaaagttcaaattgattaaagtggccattaaggagtggcatgtcaaccata |
206 |
Q |
| |
|
|||||| ||||| ||||||| | ||| | |||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||| || |||| |
|
|
| T |
15676311 |
aaatggcaatctattcaggtcgacgggtggggtggatatgtgttaaaggaaaagttcaaattgattaaagtggccctaaaggagtggcatgccattcata |
15676212 |
T |
|
| Q |
207 |
ctcaaaacttaccaggaaagataaccgctctaaaggacaggttggcggagttagatgggaaaggagaaggcgagttgttgtctgatggtgagtg |
300 |
Q |
| |
|
|||||||| |||| || ||||||| ||||| || |||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
15676211 |
ctcaaaac-------gaaatttagccgctctgaaggatagattggcggagttagatgggaaaggagaaggcgagttgttgtctgatgttgagtg |
15676125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 57 - 228
Target Start/End: Original strand, 11058466 - 11058637
Alignment:
| Q |
57 |
tgttaaagtgttggactgatattccgggttataagcagtttgtcagtactaaatggaaatcttttcaggttgccggttagggtggttatgtgttaaagga |
156 |
Q |
| |
|
|||| ||||||||||| ||||| | ||||||| ||||||||| |||| || ||||| |||||||||||| | |||| |||||| ||||| ||||| || |
|
|
| T |
11058466 |
tgttgaagtgttggaccgatatccttggttataggcagtttgtgagtaacaagtggaagtcttttcaggtttctggttggggtggctatgtcttaaaaga |
11058565 |
T |
|
| Q |
157 |
aaagttcaaattgattaaagtggccattaaggagtggcatgtcaaccatactcaaaacttaccaggaaagat |
228 |
Q |
| |
|
||| |||||||| | ||| | || ||||||||||||| | | ||| |||||||||||||||| ||||| |
|
|
| T |
11058566 |
aaaattcaaattactaaaaattgctcttaaggagtggcacgcctctcattctcaaaacttaccagggaagat |
11058637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 57 - 168
Target Start/End: Original strand, 17076671 - 17076782
Alignment:
| Q |
57 |
tgttaaagtgttggactgatattccgggttataagcagtttgtcagtactaaatggaaatcttttcaggttgccggttagggtggttatgtgttaaagga |
156 |
Q |
| |
|
|||| ||||||||||| |||||||| || |||| ||||||||| ||| |||| ||||| ||||| |||||| | |||| |||||| ||||| ||||| || |
|
|
| T |
17076671 |
tgttgaagtgttggaccgatattcctgggtataggcagtttgtgagttctaagtggaagtctttccaggtttctggttggggtggctatgtcttaaaaga |
17076770 |
T |
|
| Q |
157 |
aaagttcaaatt |
168 |
Q |
| |
|
||| |||||||| |
|
|
| T |
17076771 |
aaaattcaaatt |
17076782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 93 - 213
Target Start/End: Complemental strand, 8718735 - 8718615
Alignment:
| Q |
93 |
agtttgtcagtactaaatggaaatcttttcaggttgccggttagggtggttatgtgttaaaggaaaagttcaaattgattaaagtggccattaaggagtg |
192 |
Q |
| |
|
||||||||| |||||| | |||||| |||||||||| ||| | |||||| ||||||||||| ||||| ||||||||||| |||| ||| | |||||||| |
|
|
| T |
8718735 |
agtttgtcaatactaagtcgaaatcctttcaggttgacggatggggtggctatgtgttaaaagaaaaattcaaattgatgaaagcggctctaaaggagtg |
8718636 |
T |
|
| Q |
193 |
gcatgtcaaccatactcaaaa |
213 |
Q |
| |
|
| ||| | ||||||||||| |
|
|
| T |
8718635 |
gtatgcggaacatactcaaaa |
8718615 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 79; Significance: 6e-37; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 210 - 300
Target Start/End: Original strand, 16373860 - 16373950
Alignment:
| Q |
210 |
aaaacttaccaggaaagataaccgctctaaaggacaggttggcggagttagatgggaaaggagaaggcgagttgttgtctgatggtgagtg |
300 |
Q |
| |
|
||||||||||||| |||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
16373860 |
aaaacttaccaggcaagataaccgctctgaaggacaggttggcagagttagatgggaaaggagaaggcgagttgttgtctgatggtgagtg |
16373950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 57 - 168
Target Start/End: Complemental strand, 17661377 - 17661266
Alignment:
| Q |
57 |
tgttaaagtgttggactgatattccgggttataagcagtttgtcagtactaaatggaaatcttttcaggttgccggttagggtggttatgtgttaaagga |
156 |
Q |
| |
|
|||| ||||||||||| ||||| || ||||||| ||||||||| |||| || ||||| |||||||||||| | || | |||||| ||||| ||||| || |
|
|
| T |
17661377 |
tgttgaagtgttggaccgatatccctggttataggcagtttgtgagtaacaagtggaagtcttttcaggtttctgggtggggtggctatgtcttaaaaga |
17661278 |
T |
|
| Q |
157 |
aaagttcaaatt |
168 |
Q |
| |
|
||| |||||||| |
|
|
| T |
17661277 |
aaaattcaaatt |
17661266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 15 - 198
Target Start/End: Original strand, 4985627 - 4985810
Alignment:
| Q |
15 |
tgtctgttgatgaggaggattggggtcctagaccgtccaggttgttaaagtgttggactgatattccgggttataagcagtttgtcagtactaaatggaa |
114 |
Q |
| |
|
||||||| |||||||| |||||||| |||||||| || |||| | ||||||| ||||| ||||| ||||| || ||||| |||| ||| ||||| |
|
|
| T |
4985627 |
tgtctgtggatgaggatgattggggacctagaccaatgagaatgttgcaatgttggaaggatataccggggtataatcaatttgtgagtagtaagtggaa |
4985726 |
T |
|
| Q |
115 |
atcttttcaggttgccggttagggtggttatgtgttaaaggaaaagttcaaattgattaaagtggccattaaggagtggcatgt |
198 |
Q |
| |
|
|||||||||||| |||| || |||||||| |||||||||||||| ||| |||| ||| || | | |||||||||||||| |
|
|
| T |
4985727 |
atcttttcaggtatatggttgtgggggttatgtcttaaaggaaaagttgaaaatgataaaattgtctctgaaggagtggcatgt |
4985810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 49; Significance: 5e-19; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 93 - 213
Target Start/End: Original strand, 10484594 - 10484714
Alignment:
| Q |
93 |
agtttgtcagtactaaatggaaatcttttcaggttgccggttagggtggttatgtgttaaaggaaaagttcaaattgattaaagtggccattaaggagtg |
192 |
Q |
| |
|
||||||||| ||| || |||||||| |||||||||| ||| | |||||||||||||||||| ||||| ||||||||||| |||| ||| | |||||||| |
|
|
| T |
10484594 |
agtttgtcaataccaagtggaaatcctttcaggttgacggatggggtggttatgtgttaaaagaaaaattcaaattgatgaaagcggctctaaaggagtg |
10484693 |
T |
|
| Q |
193 |
gcatgtcaaccatactcaaaa |
213 |
Q |
| |
|
||||| | ||||||||||| |
|
|
| T |
10484694 |
gcatgcggatcatactcaaaa |
10484714 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 134 - 197
Target Start/End: Complemental strand, 20471316 - 20471253
Alignment:
| Q |
134 |
tagggtggttatgtgttaaaggaaaagttcaaattgattaaagtggccattaaggagtggcatg |
197 |
Q |
| |
|
|||||||||||||||||||| ||||| || |||||||| |||||||| | ||||||||||||| |
|
|
| T |
20471316 |
tagggtggttatgtgttaaaagaaaaatttaaattgatgaaagtggctctgaaggagtggcatg |
20471253 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 168
Target Start/End: Original strand, 30507584 - 30507738
Alignment:
| Q |
14 |
ttgtctgttgatgaggaggattggggtcctagaccgtccaggttgttaaagtgttggactgatattccgggttataagcagtttgtcagtactaaatgga |
113 |
Q |
| |
|
||||||||||||||||| ||||||| ||| ||||||| |||| || || |||||| | || | ||| |||||||||||||||| | | ||| |||| |
|
|
| T |
30507584 |
ttgtctgttgatgaggaaaattgggggcctcgaccgtcgcggttcttgaaatgttggtcagacaccccgtgttataagcagtttgttactgataagtgga |
30507683 |
T |
|
| Q |
114 |
aatcttttcaggttgccggttagggtggttatgtgttaaaggaaaagttcaaatt |
168 |
Q |
| |
|
|| |||| ||||| | |||| |||||| ||||| ||||| ||||| |||||||| |
|
|
| T |
30507684 |
aagctttacaggtggaaggttggggtggatatgttttaaaagaaaaattcaaatt |
30507738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 14 - 168
Target Start/End: Original strand, 30547927 - 30548081
Alignment:
| Q |
14 |
ttgtctgttgatgaggaggattggggtcctagaccgtccaggttgttaaagtgttggactgatattccgggttataagcagtttgtcagtactaaatgga |
113 |
Q |
| |
|
||||||||||||||||| ||||||| ||| ||||||| |||| || || |||||| | || | ||| |||||||||||||||| | | ||| |||| |
|
|
| T |
30547927 |
ttgtctgttgatgaggaaaattgggggcctcgaccgtcgcggttcttgaaatgttggtcagacaccccgtgttataagcagtttgttactgataagtgga |
30548026 |
T |
|
| Q |
114 |
aatcttttcaggttgccggttagggtggttatgtgttaaaggaaaagttcaaatt |
168 |
Q |
| |
|
|| |||| ||||| | |||| |||||| ||||| ||||| ||||| |||||||| |
|
|
| T |
30548027 |
aagctttacaggtggaaggttggggtggatatgttttaaaagaaaaattcaaatt |
30548081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 7 - 197
Target Start/End: Original strand, 10620217 - 10620407
Alignment:
| Q |
7 |
tttggtgttgtctgttgatgaggaggattggggtcctagaccgtccaggttgttaaagtgttggactgatattccgggttataagcagtttgtcagtact |
106 |
Q |
| |
|
|||||| |||||||| |||||||| |||||||||| ||||| | || ||||| | ||||||| ||||||||||| || || || ||||| |||| |
|
|
| T |
10620217 |
tttggttttgtctgtggatgaggaaaattggggtccgagaccaacgagattgttgcaatgttggaaggatattccggggtacaatcaatttgtgagtagc |
10620316 |
T |
|
| Q |
107 |
aaatggaaatcttttcaggttgccggttagggtggttatgtgttaaaggaaaagttcaaattgattaaagtggccattaaggagtggcatg |
197 |
Q |
| |
|
|| |||| ||||||||||| | || | ||| |||||||||||||||||||| || ||| |||| ||| | || | ||||||||||||| |
|
|
| T |
10620317 |
aagtggagttcttttcaggtagatggatgggggggttatgtgttaaaggaaaaattgaaaatgataaaattagctctgaaggagtggcatg |
10620407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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