View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21571_high_9 (Length: 341)
Name: NF21571_high_9
Description: NF21571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21571_high_9 |
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Alignment Details
Target: chr2 (Bit Score: 302; Significance: 1e-170; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 1 - 322
Target Start/End: Original strand, 20670546 - 20670867
Alignment:
| Q |
1 |
aactccaccattggcaatgcaagaaatgaacaacattcttgatgcactaataggatcaggagacacaagcgtaaacaaatgggtaagcatcttatcaatc |
100 |
Q |
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| T |
20670546 |
aactccaccattggcaatgcaagaaatgaacaacattcttgatgcactaataggatcaggagacacaagcataaacaaatgggtaagcatcttatcaatc |
20670645 |
T |
|
| Q |
101 |
tcacatccatcacttagcctaacactcttcatccctcaacaacccttaccatcttcctctacattaaaccccttcacttttccatatcatatcatccctc |
200 |
Q |
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|| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20670646 |
tcccatccatcacttagcctaacactcttcattcctcaacaacccttaccatcttcctctacattaaaccccttcacttttccatatcatatcatccctc |
20670745 |
T |
|
| Q |
201 |
aacgtctcgtctacactgacctcctcctcctccctcgttactctcgtatacctactcttctccccggtaaaaccatcaccgttaccgataacttccccgg |
300 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20670746 |
aacgtctcgtctacgctgacctcctcctcctccctcgttactctcgtatccctactcttctccccggtaaaaccatcaccgttaccgataacttccccgg |
20670845 |
T |
|
| Q |
301 |
taatttcacccttgatgatgtc |
322 |
Q |
| |
|
|||||||||||||||||||||| |
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| T |
20670846 |
taatttcacccttgatgatgtc |
20670867 |
T |
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