View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21571_low_1 (Length: 351)
Name: NF21571_low_1
Description: NF21571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21571_low_1 |
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Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 17 - 333
Target Start/End: Complemental strand, 38370750 - 38370433
Alignment:
| Q |
17 |
atgaaccgttgtgatgtagagaaaatgaaatgttagctaagcgat-atgcaattttgaaaataatgaaaacaattcttttggcattttcattaactccac |
115 |
Q |
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| T |
38370750 |
atgaaccgttgtaatgtagagaaaatgaaatgttagctaagcgatgatgcaattttgaaaataatgaaaacaattcttttggcattttcattaattccac |
38370651 |
T |
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| Q |
116 |
ttcaagagtctgttatctctttgattgcaagtaaaattaatcctcagggttgtcgtttttgtatattgctatacacgctaatgagtttcgaatgtggtag |
215 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38370650 |
ttcaagagtctgttatctctttgatagcaagtaaaattaatcctcagggttgtcgtttttgtatattgctatacacgctaatgagtttcgaatgtggtag |
38370551 |
T |
|
| Q |
216 |
agtttgagtgtgtttgtttgtttgannnnnnnnnnnnnnnnnnnnatgtagtatggattttattggtgagagctgtaactcagcatattctgagggtgac |
315 |
Q |
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| T |
38370550 |
agtttgagtgtgtttatttgtttgattttttttttcttcttttttatgtagtatggattttattggtgagagctgtaactcagcatattctgatggtgat |
38370451 |
T |
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| Q |
316 |
catgaaccaccaaataag |
333 |
Q |
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|||||||||||||||||| |
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| T |
38370450 |
catgaaccaccaaataag |
38370433 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 95
Target Start/End: Complemental strand, 12574073 - 12573996
Alignment:
| Q |
18 |
tgaaccgttgtgatgtagagaaaatgaaatgttagctaagcgat-atgcaattttgaaaataatgaaaacaattctttt |
95 |
Q |
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|||||| |||||||| |||||| |||||||| |||||| | ||| ||||| || || |||||||||||||||||||||| |
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| T |
12574073 |
tgaaccattgtgatggagagaagatgaaatgctagctatg-gatgatgcatttatggaaataatgaaaacaattctttt |
12573996 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 62 - 100
Target Start/End: Original strand, 38217051 - 38217089
Alignment:
| Q |
62 |
atgcaattttgaaaataatgaaaacaattcttttggcat |
100 |
Q |
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||||| ||||| ||||||||||||||||||||||||||| |
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| T |
38217051 |
atgcatttttggaaataatgaaaacaattcttttggcat |
38217089 |
T |
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