View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21571_low_2 (Length: 229)

Name: NF21571_low_2
Description: NF21571
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21571_low_2
NF21571_low_2
[»] chr7 (2 HSPs)
chr7 (75-199)||(19990888-19991027)
chr7 (1-80)||(19991074-19991160)


Alignment Details
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 75 - 199
Target Start/End: Complemental strand, 19991027 - 19990888
Alignment:
Q  75 ttttgctattgctataatgattgcatacttgtttggaatttgttttgcatttgatattcatgttaccaattgca---------------tatttatttgc 159  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||               |||||||||||    
T  19991027 ttttgctattgctataatgattgcatacttgtttggaatttgttttgcatttgatattcatgttaccaattgcatattgatttattgcatatttatttgc 19990928  T
Q  160 atttagtctacatttcctttttgcttgtatgtattgcata 199  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  19990927 atttagtctacatttcctttttgcttgtatgtattgcata 19990888  T

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Target: chr7; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 80
Target Start/End: Original strand, 19991074 - 19991160
Alignment:
Q  1 agaaagtttagaagatcaatgaggtttgtatgccaacc-------tcccagcccaaagagacaaaatcttccacacaatatttttgc 80  Q
    ||||||||||||||||||||||||||| ||||||||||       ||||||||||||||||||||||||||||||||||||||||||    
T  19991074 agaaagtttagaagatcaatgaggtttctatgccaacctcgaacctcccagcccaaagagacaaaatcttccacacaatatttttgc 19991160  T

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