View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21572_high_12 (Length: 292)
Name: NF21572_high_12
Description: NF21572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21572_high_12 |
 | |
|
| [»] chr3 (24 HSPs) |
| |
|
| [»] scaffold0083 (1 HSPs) |
| |
|
| [»] chr2 (1 HSPs) |
| |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 184; Significance: 1e-99; HSPs: 24)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 5 - 292
Target Start/End: Complemental strand, 10431499 - 10431212
Alignment:
| Q |
5 |
agatggacatcatcagcgctcttgaaaagttgcatatgaaatgccaaaagttgtcattttctgaaggagtttgtctacctcccaaattacaatcaatttg |
104 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10431499 |
agatggacatgctcaccgctcttgaaaagttgcatatgaaatgtcaaaagctgtcattttgtgaaggagtttgtctacctcccaaattacaatcaatttg |
10431400 |
T |
|
| Q |
105 |
gttttcatctcgaagaataacaccgccggttacggaatggggtctccaacatctaaccgctctttcagaattgattattggagaaggtgatgatatattt |
204 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||| || | || || ||||| ||||| ||| | | ||||||||||||||| |
|
|
| T |
10431399 |
gttttcatctcgaagaataactccgccggttacggaatggggtctccaatatttgacagcactttccttattgacaattcaaaagggtgatgatatattt |
10431300 |
T |
|
| Q |
205 |
aaaaccttgatgaaggagtcattgctacccatctcccttgtgtatctaaatatcaatcatctctctgaaatgaagtcctttgatggaa |
292 |
Q |
| |
|
|| ||||||||||||||||| ||||||||||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
10431299 |
aacaccttgatgaaggagtcgttgctacccatctcccttgtgtatctatatatcactgatctctctgaaatgaagtcctttgatggaa |
10431212 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 53 - 292
Target Start/End: Complemental strand, 10373252 - 10373013
Alignment:
| Q |
53 |
agttgtcattttctgaaggagtttgtctacctcccaaattacaatcaatttggttttcatctcgaagaataacaccgccggttacggaatggggtctcca |
152 |
Q |
| |
|
|||||||||||| |||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
10373252 |
agttgtcattttgtgaaggagtttgtctacctctcaaattacaatcaatttggatttcatctcgaagaataacaccgccggttacggaatggggtctcca |
10373153 |
T |
|
| Q |
153 |
acatctaaccgctctttcagaattgattattggagaaggtgatgatatatttaaaaccttgatgaaggagtcattgctacccatctcccttgtgtatcta |
252 |
Q |
| |
|
| ||||||| ||||| ||| |||| |||| || | | |||||||||| |||| ||||||||||||||||| ||||||||||||||||||||| ||||| |
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|
| T |
10373152 |
agatctaacagctctgtcaagcttgagtattagaaaggatgatgatatagttaacaccttgatgaaggagtcgttgctacccatctcccttgtgcatcta |
10373053 |
T |
|
| Q |
253 |
aatatcaatcatctctctgaaatgaagtcctttgatggaa |
292 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10373052 |
cgtatcaattatctctctgaaatgaagtcctttgatggaa |
10373013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 21 - 292
Target Start/End: Original strand, 10583140 - 10583411
Alignment:
| Q |
21 |
cgctcttgaaaagttgcatatgaaatgccaaaagttgtcattttctgaaggagtttgtctacctcccaaattacaatcaatt-tggttttcatctcgaag |
119 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||| || |||| | | | || |
|
|
| T |
10583140 |
cgctcttgaaaatttgcatatgaaatgccaaaagttgtcattttctgaaggagtttgtctacctctcaaattacgatcaattgtgatttttacc-caaaa |
10583238 |
T |
|
| Q |
120 |
aataacaccgccggttacggaatggggtctccaacatctaaccgctctttcagaattgattattggagaaggtgatgatatatttaaaaccttgatgaag |
219 |
Q |
| |
|
|| | |||||||||||||||||||||||||| || ||||||| ||||||||| | || ||||||| | | ||||||||||||||| |||||||||||| |
|
|
| T |
10583239 |
aacagcaccgccggttacggaatggggtctcaaagatctaacagctctttcaagctggagtattggaaaggatgatgatatatttaacaccttgatgaag |
10583338 |
T |
|
| Q |
220 |
gagtcattgctacccatctcccttgtgtatctaaatatcaatcatctctctgaaatgaagtcctttgatggaa |
292 |
Q |
| |
|
||||| ||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10583339 |
gagtcgttgctacccatctcccttgtgtatctatatatctggaatctctctgaaatgaagtcctttgatggaa |
10583411 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 5 - 292
Target Start/End: Original strand, 9852350 - 9852637
Alignment:
| Q |
5 |
agatggacatcatcagcgctcttgaaaagttgcatatgaaatgccaaaagttgtcattttctgaaggagtttgtctacctcccaaattacaatcaatttg |
104 |
Q |
| |
|
|||||||||| ||| |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
|
|
| T |
9852350 |
agatggacatgctcaccgctcttgaagatttgcatatgaaatgccaaaagttgtcattttctgaaggagtttgtctacctcccaaattaagaacaattgt |
9852449 |
T |
|
| Q |
105 |
gttttcatctcgaagaataacaccgccggttacggaatggggtctccaacatctaaccgctctttcagaattgattattggagaaggtgatgatatattt |
204 |
Q |
| |
|
| |||| | || || | ||||||||||||||||||||||||||||| || | || ||||||||| |||| |||| | | ||||||||||||||| |
|
|
| T |
9852450 |
gatttctaccaaaaaaacagcaccgccggttacggaatggggtctccaatatttgacagctctttcatcattgtggattgtaaagggtgatgatatattt |
9852549 |
T |
|
| Q |
205 |
aaaaccttgatgaaggagtcattgctacccatctcccttgtgtatctaaatatcaatcatctctctgaaatgaagtcctttgatggaa |
292 |
Q |
| |
|
|| |||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
9852550 |
aacaccttgatgaaggagtcattgctacccatctcccttgtgtctctaaatatcatggttctctctgaaatgaagtcctttgatggaa |
9852637 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 25 - 292
Target Start/End: Original strand, 9980097 - 9980364
Alignment:
| Q |
25 |
cttgaaaagttgcatatgaaatgccaaaagttgtcattttctgaaggagtttgtctacctcccaaattacaatcaatttggttttcatctcgaagaataa |
124 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||| | || || | |
|
|
| T |
9980097 |
cttgaaaatttgcatatgaaatgccaaaagttgtcattttctgaaggagtttgtctacctctcaaattacaatcaattgtgatttctaccaaaaaaacag |
9980196 |
T |
|
| Q |
125 |
caccgccggttacggaatggggtctccaacatctaaccgctctttcagaattgattattggagaaggtgatgatatatttaaaaccttgatgaaggagtc |
224 |
Q |
| |
|
||||||||||||||||||||||||||||| || | || || |||| || |||| |||| | | ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
9980197 |
caccgccggttacggaatggggtctccaatatttgacagcacttttcgacttgagaattgtaaagggtgatgatatatttaacaccttgatgaaggagtc |
9980296 |
T |
|
| Q |
225 |
attgctacccatctcccttgtgtatctaaatatcaatcatctctctgaaatgaagtcctttgatggaa |
292 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| | |||||||||||||||||||||||||||||| |
|
|
| T |
9980297 |
attgctacccatctcccttgtgcatctacgtatctgtgatctctctgaaatgaagtcctttgatggaa |
9980364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 53 - 292
Target Start/End: Original strand, 10263360 - 10263599
Alignment:
| Q |
53 |
agttgtcattttctgaaggagtttgtctacctcccaaattacaatcaatttggttttcatctcgaagaataacaccgccggttacggaatggggtctcca |
152 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| | |||| | | || || |||||||||||||||||||||||||||||| |
|
|
| T |
10263360 |
agttgtcattttctgaaggagtttgtctacctcccaaattacaatcaattgagatttctacccaaaaaacaacaccgccggttacggaatggggtctcca |
10263459 |
T |
|
| Q |
153 |
acatctaaccgctctttcagaattgattattggagaaggtgatgatatatttaaaaccttgatgaaggagtcattgctacccatctcccttgtgtatcta |
252 |
Q |
| |
|
| || | || || ||||| | |||| |||| | | ||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
10263460 |
atatttgacagcactttcctacttgactattcaaaagggtgatgatatatttaacaccttgatgaaggagtcattgctacccatctcccttttgtatcta |
10263559 |
T |
|
| Q |
253 |
aatatcaatcatctctctgaaatgaagtcctttgatggaa |
292 |
Q |
| |
|
| || | |||||||||||||||||||||||||||||| |
|
|
| T |
10263560 |
cgtgtctttgatctctctgaaatgaagtcctttgatggaa |
10263599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 53 - 292
Target Start/End: Original strand, 10520144 - 10520383
Alignment:
| Q |
53 |
agttgtcattttctgaaggagtttgtctacctcccaaattacaatcaatttggttttcatctcgaagaataacaccgccggttacggaatggggtctcca |
152 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||| ||||||||| | |||| | | || || | |||||||||||||||||||||||||||| |
|
|
| T |
10520144 |
agttgtcattttgtgaaggagtttgtctacctcccaaattgcaatcaattaagatttctacccaaaaaacagcaccgccggttacggaatggggtctcca |
10520243 |
T |
|
| Q |
153 |
acatctaaccgctctttcagaattgattattggagaaggtgatgatatatttaaaaccttgatgaaggagtcattgctacccatctcccttgtgtatcta |
252 |
Q |
| |
|
| || | || || ||||| || ||| ||||| | | ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10520244 |
atatttgacagcactttccgacttgggtattgtaaagggtgatgatatatttaacaccttgatgaaggagtcattgctacccatctcccttgtgactcta |
10520343 |
T |
|
| Q |
253 |
aatatcaatcatctctctgaaatgaagtcctttgatggaa |
292 |
Q |
| |
|
| ||||| |||||||||||||||||||||||||||||| |
|
|
| T |
10520344 |
actatcagggatctctctgaaatgaagtcctttgatggaa |
10520383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 109; E-Value: 7e-55
Query Start/End: Original strand, 53 - 253
Target Start/End: Original strand, 10666125 - 10666325
Alignment:
| Q |
53 |
agttgtcattttctgaaggagtttgtctacctcccaaattacaatcaatttggttttcatctcgaagaataacaccgccggttacggaatggggtctcca |
152 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||| ||||| | ||||||||| ||||||||| |||||||||||||||||||||||||| |
|
|
| T |
10666125 |
agttgtcattttgtgaaggagtttgtctacctcccaaattacaaacaattgtgatttcatctcaaagaataactccgccggttacggaatggggtctcca |
10666224 |
T |
|
| Q |
153 |
acatctaaccgctctttcagaattgattattggagaaggtgatgatatatttaaaaccttgatgaaggagtcattgctacccatctcccttgtgtatcta |
252 |
Q |
| |
|
| || | || || ||||| | |||| ||||| | | ||||||||||||||||| ||||||||||||||||| ||||||||||| |||||||||| |||| |
|
|
| T |
10666225 |
atatttgacagcactttcctacttgagtattgaaaagggtgatgatatatttaacaccttgatgaaggagtcgttgctacccatatcccttgtgtctcta |
10666324 |
T |
|
| Q |
253 |
a |
253 |
Q |
| |
|
| |
|
|
| T |
10666325 |
a |
10666325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 53 - 292
Target Start/End: Original strand, 9841517 - 9841756
Alignment:
| Q |
53 |
agttgtcattttctgaaggagtttgtctacctcccaaattacaatcaatttggttttcatctcgaagaataacaccgccggttacggaatggggtctcca |
152 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| |||| | | || || | |||||||||||||||||||||||| ||| |
|
|
| T |
9841517 |
agttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattgctatttctacccaaaaaacagcaccgccggttacggaatggggtcacca |
9841616 |
T |
|
| Q |
153 |
acatctaaccgctctttcagaattgattattggagaaggtgatgatatatttaaaaccttgatgaaggagtcattgctacccatctcccttgtgtatcta |
252 |
Q |
| |
|
| || | || || ||||| | ||| |||| | ||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |||| |
|
|
| T |
9841617 |
atatttgacggcactttcctacttgcgaattgataagggtgatgatatatttaacaccttgatgaaggagtcgttgctacccatctcccttgtgtctcta |
9841716 |
T |
|
| Q |
253 |
aatatcaatcatctctctgaaatgaagtcctttgatggaa |
292 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
9841717 |
aatatcagggatctctctgaaatgaagtcctttgatggaa |
9841756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 53 - 292
Target Start/End: Original strand, 10034662 - 10034901
Alignment:
| Q |
53 |
agttgtcattttctgaaggagtttgtctacctcccaaattacaatcaatttggttttcatctcgaagaataacaccgccggttacggaatggggtctcca |
152 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||||| | ||||| || || | || ||||||||||||||||| |
|
|
| T |
10034662 |
agttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattacgatttcatcccaaagaacaaagccatctgtaacggaatggggtctcca |
10034761 |
T |
|
| Q |
153 |
acatctaaccgctctttcagaattgattattggagaaggtgatgatatatttaaaaccttgatgaaggagtcattgctacccatctcccttgtgtatcta |
252 |
Q |
| |
|
| || | || || ||||| | |||| ||||| | | |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10034762 |
atatttgacagcactttccaacttgagtattgaaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtatcta |
10034861 |
T |
|
| Q |
253 |
aatatcaatcatctctctgaaatgaagtcctttgatggaa |
292 |
Q |
| |
|
|||||| || || ||||||||||||||||||||||| |
|
|
| T |
10034862 |
tatatcagggatttcgatgaaatgaagtcctttgatggaa |
10034901 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 53 - 292
Target Start/End: Original strand, 10129581 - 10129820
Alignment:
| Q |
53 |
agttgtcattttctgaaggagtttgtctacctcccaaattacaatcaatttggttttcatctcgaagaataacaccgccggttacggaatggggtctcca |
152 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||||||||||||||| | | || ||||| | ||||||| || || ||||||||||| || |
|
|
| T |
10129581 |
agttgtcattttgtgaaggagtttgtctacctcccaaattacaatcaattgagatacagtccaaaagaacagcaccgcctgtgacagaatggggtcttca |
10129680 |
T |
|
| Q |
153 |
acatctaaccgctctttcagaattgattattggagaaggtgatgatatatttaaaaccttgatgaaggagtcattgctacccatctcccttgtgtatcta |
252 |
Q |
| |
|
| || | |||||||||||| ||||| ||||||| | |||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10129681 |
agatttgaccgctctttcaagattgagtattggaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccatctcccttgtgtatcta |
10129780 |
T |
|
| Q |
253 |
aatatcaatcatctctctgaaatgaagtcctttgatggaa |
292 |
Q |
| |
|
|||||| || || ||||||||||||||||||||||| |
|
|
| T |
10129781 |
tatatcagggatttcgatgaaatgaagtcctttgatggaa |
10129820 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 53 - 292
Target Start/End: Complemental strand, 10361211 - 10360972
Alignment:
| Q |
53 |
agttgtcattttctgaaggagtttgtctacctcccaaattacaatcaatttggttttcatctcgaagaataacaccgccggttacggaatggggtctcca |
152 |
Q |
| |
|
||||||| |||| ||||||||||||||||||||||||||||||||||||| | | || ||||| | ||| ||| || || |||||||||||||| |
|
|
| T |
10361211 |
agttgtcgttttgtgaaggagtttgtctacctcccaaattacaatcaattatgatacagtccaaaagaacagcactgcctgtgacagaatggggtctcca |
10361112 |
T |
|
| Q |
153 |
acatctaaccgctctttcagaattgattattggagaaggtgatgatatatttaaaaccttgatgaaggagtcattgctacccatctcccttgtgtatcta |
252 |
Q |
| |
|
| || | || || ||||| | ||| ||||||| | |||||||||||| |||| ||||||||||||||||||||||||||| |||||||||||| ||| |
|
|
| T |
10361111 |
atatttgacagcactttccaacttgggtattggaaagggtgatgatatagttaacaccttgatgaaggagtcattgctacccgtctcccttgtgtctctg |
10361012 |
T |
|
| Q |
253 |
aatatcaatcatctctctgaaatgaagtcctttgatggaa |
292 |
Q |
| |
|
| ||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10361011 |
gaaatccatcatctctctgaaatgaagtcctttgatggaa |
10360972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 53 - 292
Target Start/End: Original strand, 10503241 - 10503480
Alignment:
| Q |
53 |
agttgtcattttctgaaggagtttgtctacctcccaaattacaatcaatttggttttcatctcgaagaataacaccgccggttacggaatggggtctcca |
152 |
Q |
| |
|
|||| ||||||| ||||||||||||||| ||||||||||||||||||||| ||| || | ||||| |||| | || | | | |||||||||| | |
|
|
| T |
10503241 |
agttatcattttgtgaaggagtttgtcttcctcccaaattacaatcaattgatatttggtcccaaagaacaacaactcctataatgaaatggggtcttga |
10503340 |
T |
|
| Q |
153 |
acatctaaccgctctttcagaattgattattggagaaggtgatgatatatttaaaaccttgatgaaggagtcattgctacccatctcccttgtgtatcta |
252 |
Q |
| |
|
| |||| |||||||||||| | ||| ||||||| |||||||||||||||||| ||||||||||||||||| ||||| ||||||||||||| | |||| |
|
|
| T |
10503341 |
agatctgaccgctctttcaagactgaaaattggagcaggtgatgatatatttaacaccttgatgaaggagtcgttgcttcccatctcccttgcatctcta |
10503440 |
T |
|
| Q |
253 |
aatatcaatcatctctctgaaatgaagtcctttgatggaa |
292 |
Q |
| |
|
|||||| | |||||| ||||||||||||||||||||||| |
|
|
| T |
10503441 |
tatatcagtgatctctatgaaatgaagtcctttgatggaa |
10503480 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 54 - 247
Target Start/End: Original strand, 10091457 - 10091650
Alignment:
| Q |
54 |
gttgtcattttctgaaggagtttgtctacctcccaaattacaatcaatttggttttcatctcgaagaataacaccgccggttacggaatggggtctccaa |
153 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||| ||| || || |||||||||||||||||||||||||||||||||| |
|
|
| T |
10091457 |
gttgtcattttgtgaaggagtttgtctacctcccaaattacaaaagattgttattttttccaaaaaaataacaccgccggttacggaatggggtctccaa |
10091556 |
T |
|
| Q |
154 |
catctaaccgctctttcagaattgattattggagaaggtgatgatatatttaaaaccttgatgaaggagtcattgctacccatctcccttgtgt |
247 |
Q |
| |
|
|||||||| ||||||| |||||||| ||| ||| | | ||||||| |||| | |||| ||| |||||| |||||||||||||||||||||| |
|
|
| T |
10091557 |
gatctaaccactctttccgaattgatgattaaagaggcaggtgatatagttaacaacttggtgacggagtcgttgctacccatctcccttgtgt |
10091650 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 54 - 247
Target Start/End: Original strand, 10198339 - 10198532
Alignment:
| Q |
54 |
gttgtcattttctgaaggagtttgtctacctcccaaattacaatcaatttggttttcatctcgaagaataacaccgccggttacggaatggggtctccaa |
153 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||| ||| ||| || || |||||||||||||||||||||||||||||||||| |
|
|
| T |
10198339 |
gttgtcattttgtgaaggagtttgtctacctcccaaattacaaaagattgttattttttccaaaaaaataacaccgccggttacggaatggggtctccaa |
10198438 |
T |
|
| Q |
154 |
catctaaccgctctttcagaattgattattggagaaggtgatgatatatttaaaaccttgatgaaggagtcattgctacccatctcccttgtgt |
247 |
Q |
| |
|
|||||||| ||||||| |||||||| ||| ||| | | ||||||| |||| | |||| ||| |||||| |||||||||||||||||||||| |
|
|
| T |
10198439 |
gatctaaccactctttccgaattgatgattaaagaggcaggtgatatagttaacaacttggtgacggagtcgttgctacccatctcccttgtgt |
10198532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 58 - 292
Target Start/End: Complemental strand, 11779387 - 11779153
Alignment:
| Q |
58 |
tcattttctgaaggagtttgtctacctcccaaattacaatcaatttggttttcatctcgaagaataacaccgccggttacggaatggggtctccaacatc |
157 |
Q |
| |
|
||||||| |||| |||||||||||||||||||||||||||||||| | || || | || || |||||| || ||||| ||||||||||||||| | | |
|
|
| T |
11779387 |
tcattttgtgaaagagtttgtctacctcccaaattacaatcaattgtgagtttttcccaaataacaacaccaccagttacagaatggggtctccaaaacc |
11779288 |
T |
|
| Q |
158 |
taaccgctctttcagaattgattattggagaaggtgatgatatatttaaaaccttgatgaaggagtcattgctacccatctcccttgtgtatctaaatat |
257 |
Q |
| |
|
|||| ||||||||||| || |||||||| | | |||| ||||| | | |||||||||||||| | |||||||| |||||||||||| | || ||| |
|
|
| T |
11779287 |
aaaccactctttcagaactggttattggaaatgatgataatatagtcaccaccttgatgaaggatttgttgctacctatctcccttgtggacctgtctat |
11779188 |
T |
|
| Q |
258 |
caatcatctctctgaaatgaagtcctttgatggaa |
292 |
Q |
| |
|
|| | |||||| ||||||||||||||| ||||||| |
|
|
| T |
11779187 |
cattgatctctatgaaatgaagtccttcgatggaa |
11779153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 58 - 292
Target Start/End: Original strand, 11771898 - 11772132
Alignment:
| Q |
58 |
tcattttctgaaggagtttgtctacctcccaaattacaatcaatttggttttcatctcgaagaataacaccgccggttacggaatggggtctccaacatc |
157 |
Q |
| |
|
||||||| |||||||||||||||||||||||| |||||||||||| | || || | || || |||||| || ||||| ||||||||||||||| | | |
|
|
| T |
11771898 |
tcattttgtgaaggagtttgtctacctcccaacttacaatcaattgtgagtttttcccaaataacaacaccaccagttacagaatggggtctccaaaacc |
11771997 |
T |
|
| Q |
158 |
taaccgctctttcagaattgattattggagaaggtgatgatatatttaaaaccttgatgaaggagtcattgctacccatctcccttgtgtatctaaatat |
257 |
Q |
| |
|
|||| ||||||| ||||| |||||||| | | |||| ||||| | | ||||||||||| |||| ||||| || |||||||||||| | || ||| |
|
|
| T |
11771998 |
aaaccactctttcgaaattggttattggaaatgatgataatatagtcaccaccttgatgaaagagttgttgctgcctatctcccttgtggacctgtctat |
11772097 |
T |
|
| Q |
258 |
caatcatctctctgaaatgaagtcctttgatggaa |
292 |
Q |
| |
|
|| | |||||| |||||||||||| |||||||||| |
|
|
| T |
11772098 |
cattgatctctatgaaatgaagtcttttgatggaa |
11772132 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 53 - 102
Target Start/End: Complemental strand, 13852871 - 13852822
Alignment:
| Q |
53 |
agttgtcattttctgaaggagtttgtctacctcccaaattacaatcaatt |
102 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13852871 |
agttgtcattttgtgaaggagtttgtctacctcctaaattacaatcaatt |
13852822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 192 - 292
Target Start/End: Original strand, 10531579 - 10531679
Alignment:
| Q |
192 |
tgatgatatatttaaaaccttgatgaaggagtcattgctacccatctcccttgtgtatctaaatatcaatcatctctctgaaatgaagtcctttgatgga |
291 |
Q |
| |
|
|||||||||| |||| ||| || |||| ||||||||||| |||||||||||||||| |||| ||| ||||||||||||||| ||||| ||||| ||| |
|
|
| T |
10531579 |
tgatgatatagttaacaccgtgctgaacgagtcattgcttcccatctcccttgtgtctctatctattggtcatctctctgaaataaagtcatttgaagga |
10531678 |
T |
|
| Q |
292 |
a |
292 |
Q |
| |
|
| |
|
|
| T |
10531679 |
a |
10531679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 53 - 102
Target Start/End: Original strand, 10531320 - 10531369
Alignment:
| Q |
53 |
agttgtcattttctgaaggagtttgtctacctcccaaattacaatcaatt |
102 |
Q |
| |
|
|||||| ||||| ||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
10531320 |
agttgttattttgtgaaggaatttgtctacctcccaaattacaatcaatt |
10531369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 192 - 281
Target Start/End: Original strand, 10680377 - 10680466
Alignment:
| Q |
192 |
tgatgatatatttaaaaccttgatgaaggagtcattgctacccatctcccttgtgtatctaaatatcaatcatctctctgaaatgaagtc |
281 |
Q |
| |
|
|||||||||| |||| ||| || |||| ||||||||||| |||||||||||||||| |||| ||| ||||||||||||||| ||||| |
|
|
| T |
10680377 |
tgatgatatagttaacaccgtgctgaacgagtcattgcttcccatctcccttgtgtctctatctattggtcatctctctgaaataaagtc |
10680466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 66 - 102
Target Start/End: Original strand, 10680131 - 10680167
Alignment:
| Q |
66 |
tgaaggagtttgtctacctcccaaattacaatcaatt |
102 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10680131 |
tgaaggagtttgtctacctcccaaattacaatcaatt |
10680167 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 292
Target Start/End: Original strand, 10192897 - 10192994
Alignment:
| Q |
195 |
tgatatatttaaaaccttgatgaaggagtcattgctacccatctcccttgtgtatctaaatatcaatcatctctctgaaatgaagtcctttgatggaa |
292 |
Q |
| |
|
||||||| |||| |||||| | || ||| | |||||||||||||||||||||| ||| ||||| | |||||| | | ||||||||||||||||||| |
|
|
| T |
10192897 |
tgatatagttaacaccttggtaaaagagccgttgctacccatctcccttgtgtctctgaatattggtgatctctataacatgaagtcctttgatggaa |
10192994 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 195 - 292
Target Start/End: Original strand, 10085977 - 10086074
Alignment:
| Q |
195 |
tgatatatttaaaaccttgatgaaggagtcattgctacccatctcccttgtgtatctaaatatcaatcatctctctgaaatgaagtcctttgatggaa |
292 |
Q |
| |
|
||||||| |||| |||||| | || ||| | |||||| ||||||||||||||| ||| ||||| | |||||| | | ||||||||||||||||||| |
|
|
| T |
10085977 |
tgatatagttaacaccttggtaaaagagccgttgctaaccatctcccttgtgtctctgaatattggtgatctctataacatgaagtcctttgatggaa |
10086074 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0083 (Bit Score: 132; Significance: 1e-68; HSPs: 1)
Name: scaffold0083
Description:
Target: scaffold0083; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 25 - 292
Target Start/End: Complemental strand, 55040 - 54773
Alignment:
| Q |
25 |
cttgaaaagttgcatatgaaatgccaaaagttgtcattttctgaaggagtttgtctacctcccaaattacaatcaatttggttttcatctcgaagaataa |
124 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| | |||| | || || | |
|
|
| T |
55040 |
cttgaaaatttgcatatgaaatgccaaaagttgtcattttctgaaggagtttgtctacctctcaaattacaatcaattgtgatttctaccaaaaaaacag |
54941 |
T |
|
| Q |
125 |
caccgccggttacggaatggggtctccaacatctaaccgctctttcagaattgattattggagaaggtgatgatatatttaaaaccttgatgaaggagtc |
224 |
Q |
| |
|
||||||||||||||||||||||||||||| || | || ||||||| ||| ||||| | | ||||||||||||||||| ||||||||||||||||| |
|
|
| T |
54940 |
caccgccggttacggaatggggtctccaatatttgacagctcttttttttttgtgtattgtaaagggtgatgatatatttaacaccttgatgaaggagtc |
54841 |
T |
|
| Q |
225 |
attgctacccatctcccttgtgtatctaaatatcaatcatctctctgaaatgaagtcctttgatggaa |
292 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||| | |||||||||||||||||||||||||||||| |
|
|
| T |
54840 |
attgctacccatctcccttgtgcatctacgtatctgtgatctctctgaaatgaagtcctttgatggaa |
54773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 100; Significance: 2e-49; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 53 - 292
Target Start/End: Original strand, 26909547 - 26909786
Alignment:
| Q |
53 |
agttgtcattttctgaaggagtttgtctacctcccaaattacaatcaatttggttttcatctcgaagaataacaccgccggttacggaatggggtctcca |
152 |
Q |
| |
|
|||||||||||| |||||| ||||||||||||||||| |||||||||||| ||| |||| || || ||||||| | |||||||||||| ||||||| |
|
|
| T |
26909547 |
agttgtcattttgtgaaggtgtttgtctacctcccaacttacaatcaattgacctttggtctcaaataacaacaccgtctgttacggaatggtgtctcca |
26909646 |
T |
|
| Q |
153 |
acatctaaccgctctttcagaattgattattggagaaggtgatgatatatttaaaaccttgatgaaggagtcattgctacccatctcccttgtgtatcta |
252 |
Q |
| |
|
| |||||||| ||||||||||||||| ||| ||| ||| |||||| |||||| |||||||||||||||| |||||||||||||||||||| | |||| |
|
|
| T |
26909647 |
agatctaaccactctttcagaattgactatcaaagagggtcatgatacatttaacaccttgatgaaggagttgttgctacccatctcccttgtttctcta |
26909746 |
T |
|
| Q |
253 |
aatatcaatcatctctctgaaatgaagtcctttgatggaa |
292 |
Q |
| |
|
| |||| |||||| ||||||||||||||||||||||| |
|
|
| T |
26909747 |
caaatcatggatctctatgaaatgaagtcctttgatggaa |
26909786 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 75; Significance: 1e-34; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 53 - 247
Target Start/End: Original strand, 11487688 - 11487882
Alignment:
| Q |
53 |
agttgtcattttctgaaggagtttgtctacctcccaaattacaatcaatttggttttcatctcgaagaataacaccgccggttacggaatggggtctcca |
152 |
Q |
| |
|
|||||||||||| ||||| |||| |||||||||||||||| |||||||| | ||| || |||| ||| ||||| |||||||||||||||||| | |
|
|
| T |
11487688 |
agttgtcattttgtgaagatgtttctctacctcccaaattagaatcaattgagattttgtcggaaagatcaacgccgcctgttacggaatggggtctcaa |
11487787 |
T |
|
| Q |
153 |
acatctaaccgctctttcagaattgattattggagaaggtgatgatatatttaaaaccttgatgaaggagtcattgctacccatctcccttgtgt |
247 |
Q |
| |
|
| |||| |||||||||||| |||| |||||||| |||||||||||| |||| |||||||||||| |||| |||||||||||||||||||||| |
|
|
| T |
11487788 |
agatctgaccgctctttcacggttgactattggagtgggtgatgatatacttaacaccttgatgaagcagtcgttgctacccatctcccttgtgt |
11487882 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 56 - 98
Target Start/End: Complemental strand, 44955066 - 44955024
Alignment:
| Q |
56 |
tgtcattttctgaaggagtttgtctacctcccaaattacaatc |
98 |
Q |
| |
|
||||||||| |||||| ||||| |||||||||||||||||||| |
|
|
| T |
44955066 |
tgtcattttgtgaaggtgtttgcctacctcccaaattacaatc |
44955024 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 50; Significance: 1e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 53 - 292
Target Start/End: Complemental strand, 17850336 - 17850094
Alignment:
| Q |
53 |
agttgtcattttctgaaggagtttgtctacctcccaaattacaatcaatttggttttcat-ctcgaagaataaca---ccgccggttacggaatggggtc |
148 |
Q |
| |
|
|||||||||||| || |||||||| ||||||||||| |||||||||||| | | ||||| | ||||||| |||| ||||| || || |||||||||| |
|
|
| T |
17850336 |
agttgtcattttgtggaggagtttccctacctcccaagttacaatcaatt-gatattcattcccgaagaacaacagccccgcctgtaacagaatggggtc |
17850238 |
T |
|
| Q |
149 |
tccaacatctaaccgctctttcagaattgattattggagaaggtgatgatatatttaaaaccttgatgaaggagtcattgctacccatctcccttgtgta |
248 |
Q |
| |
|
||||| ||||| ||||||||| ||||| | ||||| | | |||||||||| | || ||||||||||||||||| ||||| || || ||||| |||| |
|
|
| T |
17850237 |
tccaaggcctaactgctctttcatcattgagtcttggaaaggatgatgatatagtgaacaccttgatgaaggagtcgttgctcccaatatccctcgtgtc |
17850138 |
T |
|
| Q |
249 |
tctaaatatcaatcatctctctgaaatgaagtcctttgatggaa |
292 |
Q |
| |
|
||| | |||| |||||||| | | |||| ||||||||||||| |
|
|
| T |
17850137 |
tctgactatctgtcatctctataatctgaactcctttgatggaa |
17850094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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