View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21572_high_13 (Length: 287)
Name: NF21572_high_13
Description: NF21572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21572_high_13 |
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| [»] scaffold0561 (1 HSPs) |
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| [»] scaffold0226 (2 HSPs) |
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| [»] scaffold0103 (1 HSPs) |
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| [»] scaffold0359 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 241; Significance: 1e-133; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 269
Target Start/End: Original strand, 13486265 - 13486532
Alignment:
| Q |
1 |
tgttgttcatttgctacatactcatggttcataacttaatattcaacatgttccttgatgaaatgatgatgaatgtcaatgtgcttggttctactatgtt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13486265 |
tgttgttcatttgctacatactcatggttcataacttaatattcaacatgttccgtgatgaaatgatgatgaatgtcaatgtgcttggttctactatgtt |
13486364 |
T |
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| Q |
101 |
gaatgagattcttagaaatattaatagcactcaagttgttgcagtataatgtcatgacatcttaaggagacattatgatgaataaggatcaggtggaact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
13486365 |
gaatgagattcttagaaatattaatagcactcaagtttttgcagtataatgtcatgacatcttaaggagacattatgatgaataaggatctggtggaact |
13486464 |
T |
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| Q |
201 |
caggatgagcgcaagaagacaactagaggctcccaagatgcctctggttgatgacttgccaaactacat |
269 |
Q |
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| T |
13486465 |
cgggatgagcgc-agaagacaaccagaggctcccaagatgcctctggttgatgacttgccaaactacat |
13486532 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 119
Target Start/End: Complemental strand, 22889274 - 22889211
Alignment:
| Q |
56 |
tgatgaaatgatgatgaatgtcaatgtgcttggttctactatgttgaatgagattcttagaaat |
119 |
Q |
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| T |
22889274 |
tgatgaaatgatgtcgaatgtcaatgtgctttgttctgctatgttgaataagattcttggaaat |
22889211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 56 - 104
Target Start/End: Complemental strand, 20198649 - 20198601
Alignment:
| Q |
56 |
tgatgaaatgatgatgaatgtcaatgtgcttggttctactatgttgaat |
104 |
Q |
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| T |
20198649 |
tgatgaaatgatgtcgaatgtcaatgtgctttgttttgctatgttgaat |
20198601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0561 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0561
Description:
Target: scaffold0561; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 131
Target Start/End: Original strand, 8212 - 8287
Alignment:
| Q |
56 |
tgatgaaatgatgatgaatgtcaatgtgcttggttctactatgttgaatgagattcttagaaatattaatagcact |
131 |
Q |
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||||||||||||| |||| ||||||||||| ||||| ||||||||||| ||||||| ||||| || |||||||| |
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| T |
8212 |
tgatgaaatgatgtcgaatatcaatgtgctttgttctgctatgttgaataggattcttggaaatgttgatagcact |
8287 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0226 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: scaffold0226
Description:
Target: scaffold0226; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 127
Target Start/End: Complemental strand, 15774 - 15703
Alignment:
| Q |
56 |
tgatgaaatgatgatgaatgtcaatgtgcttggttctactatgttgaatgagattcttagaaatattaatag |
127 |
Q |
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||||||||||||| |||||| |||||||||| ||||| ||||||||||| | ||||| |||||||| |||| |
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| T |
15774 |
tgatgaaatgatgttgaatgacaatgtgctttgttctgctatgttgaatagggttcttggaaatattgatag |
15703 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0226; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 56 - 127
Target Start/End: Complemental strand, 25168 - 25097
Alignment:
| Q |
56 |
tgatgaaatgatgatgaatgtcaatgtgcttggttctactatgttgaatgagattcttagaaatattaatag |
127 |
Q |
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| T |
25168 |
tgatgaaatgatgttgaatgacaatgtgctttgttctgctatgttgaatagggttcttggaaatattgatag |
25097 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 80
Target Start/End: Complemental strand, 29645 - 29566
Alignment:
| Q |
1 |
tgttgttcatttgctacatactcatggttcataacttaatattcaacatgttccttgatgaaatgatgatgaatgtcaat |
80 |
Q |
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||||||||| ||| ||| ||||| |||||||||||| | ||||||||||||| |||||||||||||| ||||||||| |
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| T |
29645 |
tgttgttcagttgttacccactcaaggttcataactttaccttcaacatgttccgtgatgaaatgatgacaaatgtcaat |
29566 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 58 - 125
Target Start/End: Original strand, 18590421 - 18590488
Alignment:
| Q |
58 |
atgaaatgatgatgaatgtcaatgtgcttggttctactatgttgaatgagattcttagaaatattaat |
125 |
Q |
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|||||||||||| |||||||||| ||||| | || |||||||||||||||||||| || |||||||| |
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| T |
18590421 |
atgaaatgatgacgaatgtcaatatgctttttccttctatgttgaatgagattcttggatatattaat |
18590488 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0359 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0359
Description:
Target: scaffold0359; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 149
Target Start/End: Original strand, 3818 - 3911
Alignment:
| Q |
56 |
tgatgaaatgatgatgaatgtcaatgtgcttggttctactatgttgaatgagattcttagaaatattaatagcactcaagttgttgcagtataa |
149 |
Q |
| |
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||||||||| ||| |||| ||||||||||| ||||| ||||||||||| ||||||| ||||| || ||| |||| | ||||| |||||||| |
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| T |
3818 |
tgatgaaataatggcgaatatcaatgtgctttgttctgctatgttgaataggattcttggaaatgttgataacacttaggttgtcacagtataa |
3911 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 149
Target Start/End: Original strand, 26039255 - 26039348
Alignment:
| Q |
56 |
tgatgaaatgatgatgaatgtcaatgtgcttggttctactatgttgaatgagattcttagaaatattaatagcactcaagttgttgcagtataa |
149 |
Q |
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||||||||||||| |||||||||||||||| ||||| || | |||||| | ||||| ||||| || |||||||| | ||||| |||||||| |
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| T |
26039255 |
tgatgaaatgatgtcgaatgtcaatgtgctttgttcttctttattgaatagggttcttggaaatgttgatagcacttaggttgtcacagtataa |
26039348 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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