View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF21572_high_14 (Length: 276)
Name: NF21572_high_14
Description: NF21572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21572_high_14 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 19 - 258
Target Start/End: Complemental strand, 36354178 - 36353939
Alignment:
| Q |
19 |
tctttgtgttagcattttcatggtacataaactatgagtacgtgtacgaggacaagtttattcaggtgaagattttgttgtcccttgtgccactattatt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36354178 |
tctttgtgttagcattttcatggtacataaactatgagtacgtgtacgaggacaagtttattcaggtgaagattttgttgtcccttgtgccactattatt |
36354079 |
T |
|
| Q |
119 |
gttgcttgttgttcattgtctctcaagtggagaatcgttcactttacctttgccagaggagagtgaatctttgcatagagctggtggatctccatgggga |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36354078 |
gttgcttgttgttcattgtctctcaagtggagaatcgttcactttacctttgccagaggagagtgaatctttgcatagagctggtggatctccatgggga |
36353979 |
T |
|
| Q |
219 |
gtggcactcttgcttgtgttcctcttgtctatgatttctt |
258 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
36353978 |
gtggcactcttgcttgtgttcctcttgtttatgatttctt |
36353939 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 144; E-Value: 9e-76
Query Start/End: Original strand, 19 - 246
Target Start/End: Complemental strand, 36355464 - 36355237
Alignment:
| Q |
19 |
tctttgtgttagcattttcatggtacataaactatgagtacgtgtacgaggacaagtttattcaggtgaagattttgttgtcccttgtgccactattatt |
118 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||| ||| |||||||||||| ||||||||| |||||||||||||| || |||| |||||| |||| |
|
|
| T |
36355464 |
tcttcgtgttagcattttcatggtacataaactatgaatacatgtacgaggacatgtttattcaaatgaagattttgttggcctttgtaccactaatatt |
36355365 |
T |
|
| Q |
119 |
gttgcttgttgttcattgtctctcaagtggagaatcgttcactttacctttgccagaggagagtgaatctttgcatagagctggtggatctccatgggga |
218 |
Q |
| |
|
||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||||||| || ||| | ||||||||||||||||| ||||||||| |
|
|
| T |
36355364 |
gttgcttgttgttcattgtctctcaagtgaaggatcgttccctttacctttgccagaggagagagagtctctacatagagctggtggatcaccatgggga |
36355265 |
T |
|
| Q |
219 |
gtggcactcttgcttgtgttcctcttgt |
246 |
Q |
| |
|
|| ||||| |||||||||||||| |||| |
|
|
| T |
36355264 |
gttgcactgttgcttgtgttccttttgt |
36355237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University