View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21572_high_5 (Length: 502)
Name: NF21572_high_5
Description: NF21572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21572_high_5 |
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| [»] scaffold0103 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 288; Significance: 1e-161; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 342
Target Start/End: Complemental strand, 13486289 - 13485944
Alignment:
| Q |
1 |
atgagtatgtagcaaatgaacaacaacaggcagatattttaactaaggtgccaaatgttgttcagtttgagaaattaaggggctctttaggtttttgctt |
100 |
Q |
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| T |
13486289 |
atgagtatgtagcaaatgaacaacaacaggcagatattttaactaaggtgccaaatgttgttcagtttgagaaattaaggggctctttaggtttttgctt |
13486190 |
T |
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| Q |
101 |
gtatgagagtttatagaaattacagtcgtggaagcatgcaaatggatactttctatttactatatctaaagatgcacgagaaataaggaaaatcattgcc |
200 |
Q |
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| T |
13486189 |
gtatgagagtttatagaaattacagtcgtggaagcatgcaaatggatactttctatttactatatctaaagatgcacaagaaatatggaaaatcattgcc |
13486090 |
T |
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| Q |
201 |
attttgaaaactacggaaaatgtaagttct----atgcttcatccgtaccggtcaatgttcccacaaaccattttgattatgtggatnnnnnnnttatga |
296 |
Q |
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| T |
13486089 |
attttgaaaaccactgaaaatgtaagttctcttgatgcttcatccgtaccggccaatgttcccacaaaccattttgattatgtggataaaaaaattatga |
13485990 |
T |
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| Q |
297 |
tgttactgaaacttcaattattgctccagttattgcatgttgaacc |
342 |
Q |
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| T |
13485989 |
tgttactgaaacttcaattattgctccagttattgcatgttgaacc |
13485944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 115; E-Value: 3e-58
Query Start/End: Original strand, 336 - 458
Target Start/End: Complemental strand, 13485920 - 13485798
Alignment:
| Q |
336 |
ttgaacctaatattgatcttgtttttaaaacttctgtcaaacaatgtgttgagtttgtgagtcaagtagatcttatctctaataaggttgttaaaccatc |
435 |
Q |
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| T |
13485920 |
ttgaacctaatattgatcttgtttttaaaacctctgtcaaacaatgtgttgagtttatgagtcaagtagatcttatctctaataaggttgttaaaccatc |
13485821 |
T |
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| Q |
436 |
tagtacacttgatatttttgttg |
458 |
Q |
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| T |
13485820 |
tagtacacttgatatttttgttg |
13485798 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103 (Bit Score: 56; Significance: 5e-23; HSPs: 2)
Name: scaffold0103
Description:
Target: scaffold0103; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 17 - 164
Target Start/End: Original strand, 29637 - 29784
Alignment:
| Q |
17 |
tgaacaacaacaggcagatattttaactaaggtgccaaatgttgttcagtttgagaaattaaggggctctttaggtttttgcttgtatgagagtttatag |
116 |
Q |
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| T |
29637 |
tgaacaacaactaacatatattttcactaaggtttcaaatgttgtgcaatttgagaagttaaggggctcgttaggtatttatttgtatgagaatttatag |
29736 |
T |
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| Q |
117 |
aaattacagtcgtggaagcatgcaaatggatactttctatttactata |
164 |
Q |
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| T |
29737 |
caattacagttgtggaagcgtgcaaacaaatactttttctttactata |
29784 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0103; HSP #2
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 332 - 458
Target Start/End: Original strand, 36266 - 36392
Alignment:
| Q |
332 |
catgttgaacctaatattgatcttgtttttaaaacttctgtcaaacaatgtgttgagtttgtgagtcaagtagatcttatctctaataaggttgttaaac |
431 |
Q |
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|||||||||| |||| | |||||||| ||| ||||| |||| |||| |||||||| | | |||||||||||||| | ||||| |||||||||||||| |
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| T |
36266 |
catgttgaacttaatgtcgatcttgtgtttgaaactcctgtgaaaccctgtgttgattatacgagtcaagtagatcatgtctctgataaggttgttaaaa |
36365 |
T |
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| Q |
432 |
catctagtacacttgatatttttgttg |
458 |
Q |
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| T |
36366 |
catctagtacacctgatatttttgttg |
36392 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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