View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21572_high_7 (Length: 449)
Name: NF21572_high_7
Description: NF21572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21572_high_7 |
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Alignment Details
Target: chr7 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 184 - 444
Target Start/End: Complemental strand, 37853131 - 37852869
Alignment:
| Q |
184 |
cattatctcattcttccctagctattctaatgtcactatcttactatatttaggaattttagaggtgcataaataccgttttgactatttggtgttgtta |
283 |
Q |
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| T |
37853131 |
cattatctcattcttccctagctattctaatgtcactatcttactatatttaggaattttagaggtacataaataccgttttgactatttggtgttgtta |
37853032 |
T |
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| Q |
284 |
ttttgtttgaggatttccccccaaatgtaggtcacatgatctgacaaactgtgtcataaattcataatttattgcatattagtag--tatgttgttgaaa |
381 |
Q |
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| T |
37853031 |
ttttgtttgaggatttccccccaaatgtaggtaacatgatctgacaaactgtgtcataaattcataatttattgcatattagtagtatatgttgttgaaa |
37852932 |
T |
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| Q |
382 |
tacttaagcaagctgagtcgttccgcatagacatatcatagtgatatgtatttggcatctctg |
444 |
Q |
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| T |
37852931 |
tacttaagcaagctgagtcgttccgcatagacatatcatagtgatatgtatttggcatctctg |
37852869 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 20 - 149
Target Start/End: Complemental strand, 37853289 - 37853160
Alignment:
| Q |
20 |
ggatagttatatactaacatgtaattttggatgaagagagtatttgttataaaaagaaaaacaggtgtattcacttcnnnnnnngaaggataacaagtgt |
119 |
Q |
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| T |
37853289 |
ggatagttatatactaacatgtaattttggatgaagagagtatttgttataaaaagaaaaacaggtgtattcacttctttttttgaaggataacaagtgt |
37853190 |
T |
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| Q |
120 |
acttactgcaatttaattaggaattattat |
149 |
Q |
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| T |
37853189 |
acttactgcaatttaattaagaattattat |
37853160 |
T |
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