View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF21572_high_8 (Length: 418)
Name: NF21572_high_8
Description: NF21572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF21572_high_8 |
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Alignment Details
Target: chr7 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 13 - 406
Target Start/End: Complemental strand, 34771207 - 34770816
Alignment:
| Q |
13 |
actcattacattcaagatcattttcaatgacgggaatcaagatggactaaaatctttcaaagaatcagacttctggcaaataactctgcattactcatac |
112 |
Q |
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| T |
34771207 |
actcattacattcaagatcattttcattgacgggaatcaagatggactaaaatctttcaaagaatcagacttttggcaaataactctgcattactcatac |
34771108 |
T |
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| Q |
113 |
ttnnnnnnnnnnnnnnnnnnctctgcattactcaataaacacatcactaaagatnnnnnnnnnnnctaccaagtaatgatggggaagccaatgatcaact |
212 |
Q |
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| T |
34771107 |
ttaaaaaaaaaaaaaaaaaactctgcattactccataaacgcatcactaaagataaaaaaaaa--ctaccaagtaatgatggggaagccaatgatcaact |
34771010 |
T |
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| Q |
213 |
tcttaaatacataagttgttgcagtcgcatgtaacgaaggggccacaaccgtaacaattatgtaaattcatattttatgggttttcttttggcacttgat |
312 |
Q |
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| T |
34771009 |
tcttaaatacataagttgttgcagtcgcctgtaacgaagggtccacaaccgtaacaattatgtaaattcatattttatgggctttcttttggcacttgat |
34770910 |
T |
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| Q |
313 |
caatcattgtgtagttgttacttactaggtgtctacttatgtatttgcacacaaattgtaatacattggctatattgttgtaataccttgcctt |
406 |
Q |
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| T |
34770909 |
caatcattgtgtagttgttacttactaggtgtctacttatgtatttgcacacaaattgtaatacattggctatattgttgtaataccttgcctt |
34770816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 186 - 232
Target Start/End: Original strand, 8780692 - 8780738
Alignment:
| Q |
186 |
taatgatggggaagccaatgatcaacttcttaaatacataagttgtt |
232 |
Q |
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|||||||| |||| ||||||||||||||||||| || |||||||||| |
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| T |
8780692 |
taatgatgaggaaaccaatgatcaacttcttaattatataagttgtt |
8780738 |
T |
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