View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21572_low_1 (Length: 724)

Name: NF21572_low_1
Description: NF21572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21572_low_1
NF21572_low_1
[»] scaffold0147 (1 HSPs)
scaffold0147 (1-706)||(19807-20512)


Alignment Details
Target: scaffold0147 (Bit Score: 638; Significance: 0; HSPs: 1)
Name: scaffold0147
Description:

Target: scaffold0147; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 1 - 706
Target Start/End: Complemental strand, 20512 - 19807
Alignment:
Q  1 aagaggagaagaaattgaaggtttatttttgtagtaggacacattcgcagctttcacagtttgtaaaggagttgagaaagacagtgtttgctgatgaaat 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || || |||||||||||||||||    
T  20512 aagaggagaagaaattgaaggtttatttttgtagtaggacacattcgcagctttcacagtttgtaaaggagttgaggaaaacggtgtttgctgatgaaat 20413  T
Q  101 gggtgttgtgagtttaggttccaggaaaaatctttgtattaatcaaggtatggaactttgcttaatctggaaagttattttttggtttccttttgattac 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20412 gggtgttgtgagtttaggttccaggaaaaatctttgtattaatcaaggtatggaactttgcttaatctggaaagttattttttggtttccttttgattac 20313  T
Q  201 ttgattatgatcatgttgttacaaatgtttgtgttacagaggtacttgcacttggaaactcgtctcgcataaatgagagatgcttggaactccnnnnnnn 300  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  20312 ttgattatgatcatgttgttacaaatgtttgtgttacagaggtacttgcacttggaaactcgtctcgcataaatgagagatgcttggaactccaaaagaa 20213  T
Q  301 nnnnnnnnntgatgctacaaaagttaaggtgtgtggagtttggattttagaatatatactgtggtggtttggaacaacttcttagacactcatgaaaaca 400  Q
             ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20212 aaagaaaaatgatgctacaaaagttaaggtgtgtggagtttggattttagaatatagactgtggtggtttggaacaacttcttagacactcatgaaaaca 20113  T
Q  401 gaaatattaaaagaatattgcaatagatatgagcttttaaagtaatggcttcttgtattttgccttgcttttttcaaaagcacttttgtttaacttctgt 500  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20112 gaaatattaaaagaatattgcaatagatatgagcttttaaagtaatggcttcttgtattttgccttgcttttttcaaaagcacttttgtttaacttctgt 20013  T
Q  501 taaaacataaacaagcttactcaaatttttgttagggaagaaagaactattaacttcttttgactgagaagctttcatacactagaaggtggtttaaact 600  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  20012 taaaacataaacaagcttactcaaatttttgttagggaagaaagaactattagcttcttttgactgagaagctttcatacactagaaggtggtttaaact 19913  T
Q  601 gggctaaggatctacggatctattattgttcttttggtacaagcacgctgaaccttaatattgaaaatgacttaatgccttctcttcattttaactgggg 700  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19912 gggctaaggatctacggatctattattgttcttttggtacaagcacgctgaaccttaatattgaaaatgacttaatgccttctcttcattttaactgggg 19813  T
Q  701 atattt 706  Q
    ||||||    
T  19812 atattt 19807  T

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