View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF21572_low_17 (Length: 242)

Name: NF21572_low_17
Description: NF21572
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF21572_low_17
NF21572_low_17
[»] chr4 (15 HSPs)
chr4 (1-223)||(27556817-27557039)
chr4 (148-223)||(27503424-27503499)
chr4 (146-225)||(27514390-27514469)
chr4 (29-108)||(27559689-27559768)
chr4 (149-223)||(27489610-27489684)
chr4 (146-216)||(27524030-27524100)
chr4 (146-223)||(27468901-27468978)
chr4 (153-217)||(27497858-27497922)
chr4 (146-223)||(27508407-27508484)
chr4 (148-192)||(27476133-27476177)
chr4 (146-200)||(27486462-27486516)
chr4 (146-188)||(27506280-27506322)
chr4 (146-221)||(27554106-27554180)
chr4 (146-212)||(27431871-27431936)
chr4 (146-188)||(27479402-27479444)


Alignment Details
Target: chr4 (Bit Score: 219; Significance: 1e-120; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 27556817 - 27557039
Alignment:
Q  1 aaggccaatgagatgtcacttggtattgtttaattatatcaaggattacttcacacttcaaaactcatgccaacttagattcccctttagaaatagactt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27556817 aaggccaatgagatgtcacttggtattgtttaattatatcaaggattacttcacacttcaaaactcatgccaacttagattcccctttagaaatagactt 27556916  T
Q  101 tacaaccaattcttaaaattgtagaccaccctttcaagtgcaacctcataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27556917 tacaaccaattcttaaaattgtagaccaccctttcaagtgcaacctcataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgat 27557016  T
Q  201 ttctagctggtaagtgattataa 223  Q
    ||| |||||||||||||||||||    
T  27557017 ttccagctggtaagtgattataa 27557039  T

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Target: chr4; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 148 - 223
Target Start/End: Complemental strand, 27503499 - 27503424
Alignment:
Q  148 ataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttctagctggtaagtgattataa 223  Q
    |||||||||||||||||||| |||||||||||||||||||||||| ||||||| || ||||| ||||||| |||||    
T  27503499 ataattttgtaaacatgcttcagacatgttttcttcattatgataatgttgatgtccagctgataagtgactataa 27503424  T

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Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 146 - 225
Target Start/End: Complemental strand, 27514469 - 27514390
Alignment:
Q  146 tcataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttctagctggtaagtgattataatg 225  Q
    |||||||||||||||||||||||||||||||||||| |||||||||| || |||| || |||| |||||||| |||||||    
T  27514469 tcataattttgtaaacatgctttagacatgttttctgcattatgataatgctgatgtccagctagtaagtgactataatg 27514390  T

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Target: chr4; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 29 - 108
Target Start/End: Original strand, 27559689 - 27559768
Alignment:
Q  29 tttaattatatcaaggattacttcacacttcaaaactcatgccaacttagattcccctttagaaatagactttacaacca 108  Q
    ||||||||||| |||| |||||||| |||| |||||||||||||||| || |||||||||||||| ||||||||||||||    
T  27559689 tttaattatataaagggttacttcagacttaaaaactcatgccaactcagtttcccctttagaaagagactttacaacca 27559768  T

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Target: chr4; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 149 - 223
Target Start/End: Complemental strand, 27489684 - 27489610
Alignment:
Q  149 taattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttctagctggtaagtgattataa 223  Q
    |||||||||||||||||||||||||||||||||||||||||| | ||| ||| || ||||||| |||||||||||    
T  27489684 taattttgtaaacatgctttagacatgttttcttcattatgaaaatgtcgatgtccagctggttagtgattataa 27489610  T

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Target: chr4; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 146 - 216
Target Start/End: Complemental strand, 27524100 - 27524030
Alignment:
Q  146 tcataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttctagctggtaagtg 216  Q
    ||||||||| |||||||||||| |||||||||||||||||||||||| || |||| || ||||||||||||    
T  27524100 tcataatttcgtaaacatgcttcagacatgttttcttcattatgataatgctgatgtccagctggtaagtg 27524030  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 146 - 223
Target Start/End: Original strand, 27468901 - 27468978
Alignment:
Q  146 tcataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttctagctggtaagtgattataa 223  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||  ||| |  ||||||||||||| |||||    
T  27468901 tcataattttgtaaacatgcttcagacatgttttcttcattatgataatgccgatgtgaagctggtaagtgactataa 27468978  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 153 - 217
Target Start/End: Original strand, 27497858 - 27497922
Alignment:
Q  153 tttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttctagctggtaagtga 217  Q
    |||||||||| ||||  ||||||||||||||||||||||| ||||||| ||||||||||||||||    
T  27497858 tttgtaaacaggcttaggacatgttttcttcattatgataatgttgatgtctagctggtaagtga 27497922  T

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Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 146 - 223
Target Start/End: Complemental strand, 27508484 - 27508407
Alignment:
Q  146 tcataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttctagctggtaagtgattataa 223  Q
    |||||||||| ||||||||||  |||||||||||||||||||||| | || |||| || |||| |||||||| |||||    
T  27508484 tcataattttataaacatgctgaagacatgttttcttcattatgacaatgctgatgtccagctagtaagtgactataa 27508407  T

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Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 148 - 192
Target Start/End: Original strand, 27476133 - 27476177
Alignment:
Q  148 ataattttgtaaacatgctttagacatgttttcttcattatgata 192  Q
    |||||||||||| ||||||| ||||||||||||||||||||||||    
T  27476133 ataattttgtaagcatgcttcagacatgttttcttcattatgata 27476177  T

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Target: chr4; HSP #11
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 200
Target Start/End: Original strand, 27486462 - 27486516
Alignment:
Q  146 tcataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgat 200  Q
    |||||||| |||||||||| || |||||||||||||||||||| | |||||||||    
T  27486462 tcataattgtgtaaacatgtttcagacatgttttcttcattattaaagtgttgat 27486516  T

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Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 146 - 188
Target Start/End: Complemental strand, 27506322 - 27506280
Alignment:
Q  146 tcataattttgtaaacatgctttagacatgttttcttcattat 188  Q
    ||||||||||||||||||| || ||||||||||||||||||||    
T  27506322 tcataattttgtaaacatgtttcagacatgttttcttcattat 27506280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 27554106 - 27554180
Alignment:
Q  146 tcataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttctagctggtaagtgattat 221  Q
    ||||||||||| |||||||  | |||||||||| ||||||| ||||| ||||||| || ||||||||||| |||||    
T  27554106 tcataattttgcaaacatgtctaagacatgttt-cttcattttgataatgttgatctccagctggtaagttattat 27554180  T

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Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 212
Target Start/End: Complemental strand, 27431936 - 27431871
Alignment:
Q  146 tcataattttgtaaacatgctttagacatgttttcttcattatgatagtgttgatttctagctggta 212  Q
    |||||||||||||||||||| ||| ||||| |||||||||  ||||| ||||||| || ||||||||    
T  27431936 tcataattttgtaaacatgcattatacatg-tttcttcatcttgataatgttgatgtccagctggta 27431871  T

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Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 146 - 188
Target Start/End: Original strand, 27479402 - 27479444
Alignment:
Q  146 tcataattttgtaaacatgctttagacatgttttcttcattat 188  Q
    |||||||| |||||||||| || ||||||||||||||||||||    
T  27479402 tcataattgtgtaaacatgtttcagacatgttttcttcattat 27479444  T

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